BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0007.p (371 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312639|ref|YP_003776731.1| choline dehydrogenase [Herbaspi... 498 e-142 gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase [Herbas... 401 e-113 gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like prot... 371 e-104 >gi|300312639|ref|YP_003776731.1| choline dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 593 Score = 498 bits (1281), Expect = e-142, Method: Compositional matrix adjust. Identities = 232/356 (65%), Positives = 284/356 (79%) Query: 4 ITKPKVDVVLVGMGWSGSIMGMEMTEAGLTVVGLERGENRDTNPDFAYPKIADELTYAQR 63 I K KVDVV+VG+GW+GSIMGME+TEAGL+V+ LERG+ RDTN D YPK DEL Y+ R Sbjct: 3 IKKDKVDVVMVGLGWTGSIMGMELTEAGLSVLALERGDMRDTNTDTPYPKAVDELKYSVR 62 Query: 64 YKLMQNLSKETITVRHSPGEDALPYRQLGSFLLGNGVGGAGVHWNGVTWRSYDAELQMRS 123 L Q+LS+ET+T+RH+ + A+PYRQ GSFLLG+GVGGAG HWNG+ +R+ EL+MR+ Sbjct: 63 GALFQDLSRETVTIRHTLSDVAVPYRQHGSFLLGDGVGGAGFHWNGMMYRNLPEELEMRT 122 Query: 124 HYEQRYGKRFIPVDMTIQDWPMTYAELEPFYDRFEYIAGVSGKAGNLDGKIIEGGNVFEA 183 H+EQ+YGK+FIP DMTIQD +TY ELEPFYD E + VSGKAGNL G+I+ GGN E Sbjct: 123 HHEQKYGKKFIPEDMTIQDHGVTYKELEPFYDFSEKVMAVSGKAGNLKGQIVPGGNPLEG 182 Query: 184 PRKRDYPLPPLKNNAPATLFETAAREVGYHPFPIPAANASQAYQNPYGMQLGPCNYCGYC 243 R ++P PPL+ A+L E A R+VGYHP+P PAANASQ + NPYG+++GPCNYCG+C Sbjct: 183 ERSDEFPTPPLQYQYSASLVEKAMRDVGYHPYPAPAANASQPFTNPYGVRIGPCNYCGFC 242 Query: 244 ERFGCYMYSKASPQTCILPALLKKPNFELRDKSYVTRINLASDGKRATGVTYIDAQGRSV 303 E +GCYMYSKASPQT ILP LLK+ NFE+R K+ V ++NL + GKRATGVTYIDAQGR V Sbjct: 243 ENYGCYMYSKASPQTTILPVLLKRKNFEVRTKAQVIKVNLDASGKRATGVTYIDAQGREV 302 Query: 304 EQPADLVILCAYQMHNVRLLLLSGIGKPYDPKTGVGTVGKNYAYQKNSSVSLFFDK 359 EQPADLV+L A+Q HNVRLLLLSGIGKPYDP TG G VGKN+AYQ N +++ K Sbjct: 303 EQPADLVLLTAFQTHNVRLLLLSGIGKPYDPVTGEGVVGKNFAYQYNGGINVIMPK 358 >gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 593 Score = 401 bits (1031), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/359 (54%), Positives = 244/359 (67%), Gaps = 1/359 (0%) Query: 1 MADITKPKVDVVLVGMGWSGSIMGMEMTEAGLTVVGLERGENRDTNPDFAYPKIADELTY 60 MA+ VDVV+VG GW+G+IM EMTEAG VV LERG RDT PD AYPK +EL Y Sbjct: 1 MANKNMKPVDVVIVGFGWTGAIMAKEMTEAGQRVVALERGVYRDTYPDGAYPKTINELEY 60 Query: 61 AQRYKLMQNLSKETITVRHSPGEDALPYRQLGSFLLGNGVGGAGVHWNGVTWRSYDAELQ 120 QR+KL QNL+K + T R G+ A+PYRQ+ F G GVGGAG+HW+G WR EL+ Sbjct: 61 QQRFKLFQNLNKSSFTFRRKTGDSAIPYRQIAMFKPGEGVGGAGLHWSGCHWRILPEELR 120 Query: 121 MRSHYEQRYGKRFIPVDMTIQDWPMTYAELEPFYDRFEYIAGVSGKAGNLDGKII-EGGN 179 MRSHYE+RYGK FIP DMT+QDW ++Y ELEP++D E + G SG A + GK++ E GN Sbjct: 121 MRSHYEERYGKNFIPKDMTLQDWGVSYEELEPYFDFAEKMMGTSGTAYRVGGKVVDESGN 180 Query: 180 VFEAPRKRDYPLPPLKNNAPATLFETAAREVGYHPFPIPAANASQAYQNPYGMQLGPCNY 239 FEA R ++PLP K A LF AA++ G HPF +P+ANA+ Y N YG Q+GPC + Sbjct: 181 PFEADRSDNFPLPAQKEQYQAALFRKAAQQAGLHPFTLPSANAAAPYVNQYGCQMGPCTF 240 Query: 240 CGYCERFGCYMYSKASPQTCILPALLKKPNFELRDKSYVTRINLASDGKRATGVTYIDAQ 299 CG+C + CY YSKASP I+PAL + FELR V RI L S K+ATGVTY+D Sbjct: 241 CGFCSGYACYNYSKASPNVNIMPALRQSNLFELRSSCNVLRIELDSSRKKATGVTYVDIN 300 Query: 300 GRSVEQPADLVILCAYQMHNVRLLLLSGIGKPYDPKTGVGTVGKNYAYQKNSSVSLFFD 358 G +V QPA +VI + +N RL LLSGIGKPYDP + G VG+N A+Q S+++ FF+ Sbjct: 301 GDTVFQPASIVIASTFAYNNARLFLLSGIGKPYDPVSNTGAVGRNIAFQMMSTINAFFE 359 >gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like protein [Herbaspirillum seropedicae SmR1] Length = 590 Score = 371 bits (953), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/362 (49%), Positives = 243/362 (67%), Gaps = 2/362 (0%) Query: 1 MADITKPKVDVVLVGMGWSGSIMGMEMTEAGLTVVGLERGENRDTNPDFAYPKIADELTY 60 M DIT VDVV+VG+GW+GS+M +E+ +AGL V LERG +R DFAYPK AD+ Y Sbjct: 1 MPDITNDDVDVVIVGLGWAGSLMAIELAQAGLKVRALERGPDRPPE-DFAYPKPADQYGY 59 Query: 61 AQRYKLMQNLSKETITVRHSPGEDALPYRQLGSFLLGNGVGGAGVHWNGVTWRSYDAELQ 120 A R K+ +TVR++ + ALP R+ G+F G GVGG+G+HW V R+ +L+ Sbjct: 60 ATRNKVFATPRDAALTVRYNTAQQALPTRKWGAFAPGTGVGGSGLHWTAVLIRATPTDLK 119 Query: 121 MRSHYEQRYGKRFIPVDMTIQDWPMTYAELEPFYDRFEYIAGVSGKAGNLDGKIIEGGNV 180 ++++ +Q Y + +M I+D+P T+ E+EP YD F+ + G+SG GNL G+I GG+ Sbjct: 120 LKTYADQAYKHSNLDPEMRIKDFPFTWNEIEPHYDFFDKVCGLSGTTGNLRGQIQPGGDP 179 Query: 181 FEAPRKRDYPLPPLKNNAPATLFETAAREVGYHPFPIPAANASQAYQNPYGMQLGPCNYC 240 FE PR YPLP L + TLF AR++GYHPFP P+AN SQA+ NPYG Q+ PCNYC Sbjct: 180 FEGPRSNPYPLPALHDTYNNTLFADVARKLGYHPFPNPSANVSQAWTNPYGAQIAPCNYC 239 Query: 241 GYCERFGCYMYSKASPQTCILPALLKKPNFELRDKSYVTRINLASDGKRATGVTYIDAQG 300 G+C ++ C YSKASPQT IL + + PNF+ + + V R++L +D K A GVTY+D Sbjct: 240 GFCSKYPCLNYSKASPQTTILDVVKRLPNFDYKVNANVIRVDLHADKKTARGVTYVDENM 299 Query: 301 RSVEQPADLVILCAYQMHNVRLLLLSGIGKPYDPKTGVGTVGKNYAYQKNSSVSLFF-DK 359 + V QPA +VIL ++Q NVRL+LLSGIGKPYDP T G +G+NYA+ N +LFF DK Sbjct: 300 KEVFQPAKIVILSSFQFANVRLMLLSGIGKPYDPITETGVIGRNYAFLSNGGATLFFKDK 359 Query: 360 DF 361 F Sbjct: 360 HF 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,256,795 Number of extensions: 55741 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 3 Length of query: 371 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 284 Effective length of database: 1,207,925 Effective search space: 343050700 Effective search space used: 343050700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)