BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0006.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343... 235 3e-63 gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478... 193 1e-50 gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563... 159 2e-40 >gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343 [Herbaspirillum seropedicae SmR1] Length = 240 Score = 235 bits (599), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/234 (52%), Positives = 156/234 (66%), Gaps = 5/234 (2%) Query: 4 RRGFLFKTIAIVPAASALTAATLLPSAAQTVDAGTVAGE---YQPRFFNADEWIFLKAAV 60 RR FL + +AIVPAAS L AT + + + + G+ Y P +F A EW FL AAV Sbjct: 8 RRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEWAFLNAAV 67 Query: 61 DRLIPADPEGPGALDLNVHAFIDGQMESGFGHASNWYMQGPFKGDAPALFGYQASMPPRE 120 D LIP+D G GAL+ V FID QME+ +G WYMQGPF D+ GYQ S+ PR+ Sbjct: 68 DHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPRD 127 Query: 121 LYRAGIAALNEHCRKNFSGKTFAQLAPGEQEQLFKDMDGGTLKFEQVSAQWFFTFLLQNT 180 +YR GIAA N+ C KN GK FA+L +Q ++ K MDGG + FE V A+ FF F+L NT Sbjct: 128 IYRQGIAACNDWCSKN-HGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFNFMLGNT 186 Query: 181 KEGYLSDPIHGGNKGMGSWKMIGFPGARADFLDFVGPSDKVYPYGPVSI-GKRG 233 KEGY +DP++GGN+ MG WKM+GFPGARADF D+V + YPYGPVSI G++G Sbjct: 187 KEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 >gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478 [Herbaspirillum seropedicae SmR1] Length = 235 Score = 193 bits (491), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 107/231 (46%), Positives = 134/231 (58%), Gaps = 9/231 (3%) Query: 4 RRGFLFKTIAIVP-AASALTAATLLPSAAQTVDAGTVAGEYQPRFFNADEWIFLKAAVDR 62 RR FL + P AA A+TA +L A + + YQP FFN DE+ L A D Sbjct: 10 RRRFLRGALTAAPVAALAVTAGSLTAKA----EGPSPDQPYQPSFFNRDEFALLSALADT 65 Query: 63 LIPADPEGPGALDLNVHAFIDGQMESGFGHASNWYMQGPFKGDAPALFGYQASMPPRELY 122 LIPAD GPGAL V FID QM + +G WYMQGPF DAP FGYQ PPRELY Sbjct: 66 LIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRELY 125 Query: 123 RAGIAALNEHCRKNFSGKTFAQLAPGEQEQL---FKDMDGGTLKFEQVSAQWFFTFLLQN 179 + G+A + R+ + G + +L ++E++ F+ + G+LK + F LLQN Sbjct: 126 KKGLAEFDAAIRQQY-GHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNLLLQN 184 Query: 180 TKEGYLSDPIHGGNKGMGSWKMIGFPGARADFLDFVGPSDKVYPYGPVSIG 230 EGY DP GGN+GMGSWKMIGFPGARAD+ D+V K YP P+S G Sbjct: 185 VHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG 235 >gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563 [Herbaspirillum seropedicae SmR1] Length = 237 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 120/197 (60%), Gaps = 9/197 (4%) Query: 42 EYQPRFFNADEWIFLKAAVDRLIPADPEGPGALDLNVHAFIDGQMESGFGHASNWYMQGP 101 Y+P FFN +W+F+ AA DRLIPA+ GPGAL+ NV FID Q+ +G G S+ Y QGP Sbjct: 43 HYKPVFFNPAQWLFILAACDRLIPAEGRGPGALETNVPVFIDQQLHAGLG--SDIYQQGP 100 Query: 102 FKGDAPALFGYQASMPPRELYRAGIAALNEHCRKNFSGKTFAQLAPGEQEQLFKDMDGGT 161 + DAPA G+Q P+++YR GI L + + GK F QL +++ L + Sbjct: 101 HQPDAPATLGFQIPYAPQDVYRIGIT-LTQQISQQQHGKPFEQLDAKDKDALLTALQKNG 159 Query: 162 LKF-----EQVSAQWFFTFLLQNTKEGYLSDPIHGGNKGMGSWKMIGFPGARADFLDFVG 216 + F + + FF LL +TK GYL+DP++GGNK M +W IGFPGARA + ++V Sbjct: 160 VDFAALGEKSMRPSQFFGQLLGDTKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVD 219 Query: 217 PSDKVYPYGPVSI-GKR 232 + YP GPVS+ GKR Sbjct: 220 QHNVKYPLGPVSLSGKR 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 799,267 Number of extensions: 35536 Number of successful extensions: 76 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 72 Number of HSP's successfully gapped: 3 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)