BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0004.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313811|ref|YP_003777903.1| 3-hydroxyacyl-CoA dehydrogenase...   135   5e-33
gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase...    79   4e-16

>gi|300313811|ref|YP_003777903.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  135 bits (339), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 10  FARAGCSVAIYDAVPEALSACTKLLHDNISDLARHGLITETPEVVLARIKPAKTLAEALK 69
           F   G  V+  D +P+A       +  +   L   GL     +    R++    L  AL+
Sbjct: 34  FLAQGLEVSAVDPMPQAEQKLRAAIARHWPSLQALGLAEHASQ---ERLRFYDQLEAALE 90

Query: 70  GAALVQENVKETVEVKRQIFAEMDKLAEPGAILTSSTSWIPTSEFSEHLPGRHRILVAHP 129
           GA  VQEN  E  ++K  +F  MD       +L SS+S +  S+         R+++ HP
Sbjct: 91  GADFVQENGPEREDLKIDLFRRMDAALPAQVVLASSSSGLLMSKVQAACRHPQRVVLGHP 150

Query: 130 VNPPYLVPLVELAPAPWTSEETVKRAHDIYTRAGQSPVLLKKEITGFLLNRIQGAVLNEA 189
            NPP+L+PLVE+     TS E V+ A D Y   G+ P+ ++KE+ G + NR+Q A+  EA
Sbjct: 151 FNPPHLIPLVEVIGGAQTSPEAVQTALDFYAAIGKKPIHVRKEVKGHIANRLQAALWREA 210

Query: 190 LNLYENGYASSEDLDKVLKDGLGLRWSFMGPFETIDLNAPEGVIDY 235
            +L E G AS+ED+D  +  G GLRW+ MGP+  + ++  EG I +
Sbjct: 211 FHLVEQGVASTEDIDTAIAYGPGLRWALMGPYLNLHMSGGEGGIQH 256


>gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 6/219 (2%)

Query: 9   VFARAGCSVAIYDAVPEALSACTKLLHDNISDL-ARHGLITETPEVVLARIKPAKTLAEA 67
           V A AG  V +YD+   A       +  N+  L ++  L     +    RI  A++L E 
Sbjct: 31  VAAVAGHPVLLYDSREGAAGKAIGAICTNLDKLVSKDKLTPALAQAASQRISVAQSLEE- 89

Query: 68  LKGAALVQENVKETVEVKRQIFAEMDKLAEPGAILTSSTSWIPTSEFSEHLPGRHRILVA 127
           L  A LV E + E +  K ++F +++ +     IL ++TS +  ++ +  L    R++  
Sbjct: 90  LHQADLVIEAIVEQLAAKHELFGKLEAIVSTRCILATNTSSLSITQIAAGLQHPERVVGM 149

Query: 128 HPVNPPYLVPLVELAPAPWTSEETVKRAHDIYTRAGQSPVLLKKEITGFLLNRIQGAVLN 187
           H  NP  ++ LVE+     +     +  HD     G++PV + +   GF++NR+      
Sbjct: 150 HFFNPVPMMALVEIISGLASDAALAQCLHDTALAWGKTPV-MARSTPGFIVNRLARPYYA 208

Query: 188 EALNLYENGYASSEDLDKVLKDGLGLRWSFMGPFETIDL 226
           E L +   G A    +D V+++  G R   MGPFE +DL
Sbjct: 209 EGLRMLHEGGAQPATIDAVMREAGGFR---MGPFELMDL 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 885,095
Number of extensions: 34148
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)