BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0001.p
         (69 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t...    56   4e-10
gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t...    55   1e-09
gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t...    53   6e-09
gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa...    52   7e-09

>gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 56.2 bits (134), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)

Query: 1   LLDEPFEGLAPAVVQELFTVFDQLRRE--VSIVIVEHNLDLVLALADRVFALERGAVFHT 58
           LLDEP  GL P   QEL  + D+LRRE  V+++++EH++ L++ ++DR+  +E G    T
Sbjct: 179 LLDEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVT 238

Query: 59  G 59
           G
Sbjct: 239 G 239


>gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 1   LLDEPFEGLAPAVVQELFTVFDQLRRE--VSIVIVEHNLDLVLALADRVFALERGAVFHT 58
           LLDEP EGLAP +VQEL  V  +L  E  +S+++VE +  + L+L  R   L+RG + H 
Sbjct: 154 LLDEPMEGLAPIIVQELLKVIRRLVSEEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHA 213


>gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 234

 Score = 52.8 bits (125), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 1   LLDEPFEGLAPAVVQELFTVFDQLRRE-VSIVIVEHNLDLVLALADRVFALERGAVFHTG 59
           +LDEP EGLAP +V E+     Q++   +SI++VE NL++   LADR + +E+G + + G
Sbjct: 153 MLDEPVEGLAPVIVDEIVAQIRQIKATGMSIILVEQNLEVCTQLADRHYIVEQGRIVYHG 212


>gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 52.4 bits (124), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 1   LLDEPFEGLAPAVVQELFTVFDQLRRE-VSIVIVEHNLDLVLALADRVFALERGAVFHTG 59
           +LDEP  GLAP +V+E+F +  +LRR  VSI++VE N    L +AD  + LE GA+   G
Sbjct: 162 MLDEPSLGLAPLIVREIFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHG 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.144    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 204,722
Number of extensions: 6242
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 5
Length of query: 69
Length of database: 1,619,870
Length adjustment: 41
Effective length of query: 28
Effective length of database: 1,425,735
Effective search space: 39920580
Effective search space used: 39920580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)