BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0235.0013.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   301   9e-83
gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   299   3e-82

>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
            oxidoreductase subunit alpha/beta [Herbaspirillum
            seropedicae SmR1]
          Length = 1180

 Score =  301 bits (770), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 185/418 (44%), Positives = 241/418 (57%), Gaps = 60/418 (14%)

Query: 39   PFEILVAGVGGTGVVTVGALITMAAHLEGKGASTLDFMGFAQKGGAVLSHVRIAASPSAL 98
            PF IL+ G+GGTGV+T+GAL+ MAAHLEGKGAS LD  G +QK G+V SHVRIAA   A+
Sbjct: 743  PFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGSVTSHVRIAARRDAI 802

Query: 99   NQVRIDLQQADAVFACDLVVSAMPEGLSVMRRGHTKVIAN-------------DREIP-- 143
               RI   +AD V  CD++ +   + +S MR G T+ + N             D E P  
Sbjct: 803  RAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQPPGQFARNPDWEFPVE 862

Query: 144  --------------------------------TXFFFFFFF-------LNLPAMMRAIEL 164
                                            T  F   +        L   +++RAIEL
Sbjct: 863  EVKALIVESVGQQADFIDATRLATALMGDSIATNLFMLGYAWQRGELPLTEASLLRAIEL 922

Query: 165  NGVAVDMNKRAFTLGRLAAADAAALDKLGKPKQQVIQFAAPKSLADTVAFRIDWLTKYQN 224
            NGVAV  NK AF  GR AA D A ++++  P Q V+    P+SL   +  R+  LT YQ+
Sbjct: 923  NGVAVQANKTAFAWGRRAAVDLARVEQIAVPAQPVL-LHLPQSLDQLIKRRVSLLTDYQD 981

Query: 225  RAYARRYEEAVAAVERAEARLEDNASRRPISKMVARNLFKLMAYKDEYEVARLHADPVFR 284
             AYA ++ E V AV  AEA L  +     ++  VARNL +LMAYKDEYEVARL+ +  F+
Sbjct: 982  AAYAAQFLEVVEAVRAAEAALGSDK----LATAVARNLSRLMAYKDEYEVARLYTNGQFQ 1037

Query: 285  EQIAAQFDGDYKLAFHLAPPMLARKKPGSDVPAKMRFGAWMMSGFAVLSRFKSLRGTPLD 344
            +++A QF+GD+ L+FHLAPP+LARK  G     K R+G W+M  F +L+R K LRG  LD
Sbjct: 1038 KELAQQFEGDFSLSFHLAPPLLARKD-GQGHLLKARYGGWVMQAFKLLARMKGLRGGLLD 1096

Query: 345  VFGYTEERRRERALRDRYLDFVLMLADRLNVDNKGVALKLAQLPEQIRGYGHVKLAAM 402
            +FG+TEERR ER L  +Y   VL L  RL   N   A++LAQLPEQ+RGYGHVKL A+
Sbjct: 1097 LFGHTEERRMERELIVQYRQLVLDLLPRLTAANLATAIELAQLPEQVRGYGHVKLKAV 1154


>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
            oxidoreductase subunit alpha/beta [Herbaspirillum
            seropedicae SmR1]
          Length = 1199

 Score =  299 bits (765), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/421 (42%), Positives = 233/421 (55%), Gaps = 59/421 (14%)

Query: 36   FAKPFEILVAGVGGTGVVTVGALITMAAHLEGKGASTLDFMGFAQKGGAVLSHVRIAASP 95
             A+P+ ILV GVGGTGV+T+G +I MAAH+EG+  S LD  G AQKGG V+SHVR+A   
Sbjct: 742  LAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDA 801

Query: 96   SALNQVRIDLQQADAVFACDLVVSAMPEGLSVMRRGHTKVIAN-------------DREI 142
            + ++  R+    AD V  CD++V+A  + LS M  G T    N             D + 
Sbjct: 802  AHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQF 861

Query: 143  PTX------------------------------------FFFFFFF------LNLPAMMR 160
            PT                                     F   + +      L+  A++R
Sbjct: 862  PTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNMFMLGYAWQKGWVPLSEAALLR 921

Query: 161  AIELNGVAVDMNKRAFTLGRLAAADAA-ALDKLGKP--KQQVIQFAAPKSLADTVAFRID 217
            AIELN + V+ NK+AF  GR AA D A  L   G+     QVI+F    +L + V  R+ 
Sbjct: 922  AIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMSAQVIEFKRTPTLDELVERRVA 981

Query: 218  WLTKYQNRAYARRYEEAVAAVERAEARLEDNASRRPISKMVARNLFKLMAYKDEYEVARL 277
            +LT Y N AYAR Y + V  V   E+ L +      +S+ VA  LFKLMAYKDEYEVARL
Sbjct: 982  FLTDYLNAAYARSYRDFVEQVRARESALGEAGRGLKLSRAVASYLFKLMAYKDEYEVARL 1041

Query: 278  HADPVFREQIAAQFDGDYKLAFHLAPPMLARKKPGSDVPAKMRFGAWMMSGFAVLSRFKS 337
            HADP FR +IA  F+GDYKL FHLAPP+LA++     +  K  FG+WMM  F VL+R + 
Sbjct: 1042 HADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHL-RKQAFGSWMMPVFGVLARLRF 1100

Query: 338  LRGTPLDVFGYTEERRRERALRDRYLDFVLMLADRLNVDNKGVALKLAQLPEQIRGYGHV 397
            LRGT LD F YTEERR+ERAL   Y   +  L DRL  +N      +A++PE+IRGYGHV
Sbjct: 1101 LRGTALDPFAYTEERRQERALITEYRATLSRLLDRLTPENLEQITAVARIPEEIRGYGHV 1160

Query: 398  K 398
            K
Sbjct: 1161 K 1161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,106,263
Number of extensions: 37721
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 4
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)