BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0235.0007.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase [H...   346   7e-97
gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase [Herbaspir...   123   1e-29
gi|300310257|ref|YP_003774349.1| acetyl-coenzyme A synthetase [H...    58   5e-10

>gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  346 bits (888), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 160/173 (92%), Positives = 165/173 (95%)

Query: 1   VLTMKWTFDIKPDDVYWCTADIGWITGHTYIAYGPLAVGATQIVFEGVPTYPNAGRFWDM 60
           VLTMKWTFDIKPDDVYWCTADIGWITGHTYIAYGPLAVGATQIVFEGVPTYPNAGRFWDM
Sbjct: 292 VLTMKWTFDIKPDDVYWCTADIGWITGHTYIAYGPLAVGATQIVFEGVPTYPNAGRFWDM 351

Query: 61  VQRHKATIFYTAPTAIRSLIKAAEADEKIHPKQYDLSSLRLLGSVGEPINPEAWMWYYKN 120
           V RHKATIFYTAPTAIRSLIKAA+ADEK+HPKQYDLSSLR+LGSVGEPINPEAWMWYYKN
Sbjct: 352 VARHKATIFYTAPTAIRSLIKAADADEKVHPKQYDLSSLRILGSVGEPINPEAWMWYYKN 411

Query: 121 IGQEKCPIVDTFWQTETGGHMISPLPGATPQVPGSCTLPLPGITAAPSETRGR 173
           +G E CPIVDTFWQTETGGHMISPLPGATPQVPGSCTLPLPGITAA  +  G 
Sbjct: 412 VGHENCPIVDTFWQTETGGHMISPLPGATPQVPGSCTLPLPGITAAIVDETGN 464


>gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score =  123 bits (308), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 11/163 (6%)

Query: 3   TMKWTFDIKPDDVYWCTADIGWITGHTYIAYGPLAVGATQIVFEGVPTYPNAGRFWDMVQ 62
           +M+  F  +P + Y+CT+DIGW+ GH+YI YGPL  G   +++EG+P  P+AG +W +V+
Sbjct: 264 SMQHIFCGQPGETYFCTSDIGWVVGHSYIVYGPLIAGMATVLYEGLPIRPDAGIWWSIVE 323

Query: 63  RHKATIFYTAPTAIRSLIKA-AEADEKIHPKQYDLSSLRLLGSVGEPINPEAWMWYYKNI 121
           ++K T  ++APTAIR L K   E  E+     YD SSL+ L   GEP++     W     
Sbjct: 324 KYKVTRMFSAPTAIRVLKKQPPECMER-----YDTSSLKALYLAGEPLDETTSSWIS--- 375

Query: 122 GQEKCPIVDTFWQTETGGHMISPLPGA--TPQVPGSCTLPLPG 162
           G  K P++D +WQTE+G  +IS   G    P   GS  +P+PG
Sbjct: 376 GALKVPVIDNYWQTESGWPIISIAKGIDDKPTRLGSPGVPMPG 418


>gi|300310257|ref|YP_003774349.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 556

 Score = 58.2 bits (139), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 4   MKWTFDIKPDDVYWCTADIGWITGHTYIAYGPLAVGATQIVFEGVPTYPNAGRFWDMVQR 63
           M+    + P D +W  AD GW  G  Y   GPLA+G      E   T       ++ ++R
Sbjct: 229 MREAVGLLPQDKFWNMADPGWAYGLYYAIIGPLAIGHGITFNEAAFTVSGT---YETIRR 285

Query: 64  HKATIFYTAPTAIRSLIKAAEADEKIHPKQYDLSSLRLLGSVGEPINPEAWMWYYKNIGQ 123
              T    APTA R ++ A E        +     LR + S GEP+N E   W+   +  
Sbjct: 286 LGITSLAGAPTAYRMMMAAGEEAAASVKGR-----LRAVSSAGEPLNAEVVRWFASAL-- 338

Query: 124 EKCPIVDTFWQTETGGHMISPLPGATPQVPGSCTLPLPG 162
              PI D + QTE G  + +        VPGS    +PG
Sbjct: 339 -DVPIHDHYGQTELGMVVNNHHALRHEVVPGSAGFAMPG 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,918
Number of extensions: 26787
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 3
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)