BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0235.0006.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase [H...   343   5e-96
gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase [Herbaspir...   137   8e-34
gi|300309365|ref|YP_003773457.1| acetyl-coenzyme A synthetase [H...    59   2e-10

>gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  343 bits (881), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 164/203 (80%), Positives = 182/203 (89%), Gaps = 4/203 (1%)

Query: 1   VADIETFKQENRVFAPPAEFVKNAAVSGMDGYNALCAEAERDYEGFWARLARENLQWKKP 60
           +ADIETFKQENRVFAPPAE VK+AA+SGMD Y+AL AE  +DYEG WARLA++NL+W KP
Sbjct: 1   MADIETFKQENRVFAPPAELVKHAAISGMDAYHALNAEFAKDYEGTWARLAKDNLKWHKP 60

Query: 61  FTKTLNEADAPFYKWFEDGKINVSYNCLDVNLENGNADKTAVIFESDDAKVTRVTYRELH 120
           FT+TL+E++APFYKWF DG++NVSYNCLDVNLENGNADKTAVIFESDD KVTRV+YRELH
Sbjct: 61  FTQTLDESNAPFYKWFADGQVNVSYNCLDVNLENGNADKTAVIFESDDGKVTRVSYRELH 120

Query: 121 KKVCHFANGLKSLGVKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLQER 180
           +KVC FANGLKSLG+KKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSL ER
Sbjct: 121 QKVCQFANGLKSLGIKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLHER 180

Query: 181 VIDAGAVAV----KKXRASNTLP 199
           VIDAGAVAV     + R    LP
Sbjct: 181 VIDAGAVAVLTADYQVRGGKQLP 203


>gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score =  137 bits (344), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 3/142 (2%)

Query: 44  EGFWARLARENLQWKKPFTKTLNEADAPFYKWFEDGKINVSYNCLDVNLENGNADKTAVI 103
           E FWA+ A + + W++PF++TL+ +  PF +WF DG+ N+ +N +D +L    A + A+I
Sbjct: 15  EAFWAQEA-QRIHWQQPFSRTLDYSRPPFARWFIDGQTNLCHNAVDRHLPE-RAQQAALI 72

Query: 104 FESDDAKVTRV-TYRELHKKVCHFANGLKSLGVKKGDRVVIYMPMSVEGVAAMQACARIG 162
             S +    RV TY EL ++V   A  +++LGV++GDRV+IYMPM  E V AM ACARIG
Sbjct: 73  AISTETNSERVYTYAELQQEVMAMAASMQALGVQRGDRVLIYMPMIAEAVFAMLACARIG 132

Query: 163 ATHSVVFGGFSAKSLQERVIDA 184
           A HSVVFGGF++ SL  R+ DA
Sbjct: 133 AVHSVVFGGFASNSLASRIDDA 154


>gi|300309365|ref|YP_003773457.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 549

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 73  YKWFEDGKINVSYNCLDVNLENGNADKTAVIFESDDAKVTRVTYRELHKKVCHFANGLKS 132
           Y+W      N++    D    +G+  +TA+I E  D  VT  +Y +L      FAN L++
Sbjct: 24  YEWQIPTHFNIAQAACD-RWADGSG-RTAIICEDADGSVTSYSYDQLKILSDRFANALRA 81

Query: 133 LGVKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLQERVIDAGAVAV 189
            GV +GDR+ IY+   +E V    A  ++GA    +F  F   ++  R+ ++GAVA+
Sbjct: 82  AGVGRGDRIGIYLSQRIETVITHLAAYKLGAITVPLFYLFGPDAIAYRLDNSGAVAL 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 610,088
Number of extensions: 22809
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)