BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0235.0005.p
         (613 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspiril...   832   0.0  
gi|300310874|ref|YP_003774966.1| transmembrane protein [Herbaspi...   334   2e-92

>gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 513

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/451 (90%), Positives = 427/451 (94%), Gaps = 4/451 (0%)

Query: 167 KTLLAQTGIHITFLLSAMAI--EGXAAT--DAVNEGVRQGYSHPDNVLRASIVADPQFDR 222
           + +   TGI   FL   M +  EG + +  DAVNEGVR+GYSHPDNVLRASIVADPQF+R
Sbjct: 63  RPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQFER 122

Query: 223 KNTKDNTPAVVHVELVPGNTVDVRIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTMGA 282
           KNTKDNTPAV+H+ELVPGNTVDV+IAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTMGA
Sbjct: 123 KNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTMGA 182

Query: 283 GWCPPGMLGIGIGGTAEKAMLMAKEVLMDDIDMYELKQRGPQNKTEELRIELCDKVNALG 342
           GWCPPGMLGIGIGGTAEKAMLMAKEVLM+DIDMYEL +RGPQNKTEELRIEL +KVNALG
Sbjct: 183 GWCPPGMLGIGIGGTAEKAMLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNALG 242

Query: 343 IGAQGLGGLTTVLDVKIAMYPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSLSE 402
           IGAQGLGGLTTVLDVKI M+PTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSLS+
Sbjct: 243 IGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSLSD 302

Query: 403 WPEVHWVPDTEKSKRVDLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGE 462
           WPEVHWV DTEKSKRV+LDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQ+MLAKGE
Sbjct: 303 WPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAKGE 362

Query: 463 KLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGP 522
           KLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGP
Sbjct: 363 KLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGP 422

Query: 523 AAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDA 582
           AAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDA
Sbjct: 423 AAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDA 482

Query: 583 NGISVHNTGPAEWKEKIATNTALSKIAVTTA 613
           NG+SVHNTGPAEWKEKIA + +LSKI VTTA
Sbjct: 483 NGVSVHNTGPAEWKEKIAQSVSLSKIPVTTA 513


>gi|300310874|ref|YP_003774966.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  334 bits (856), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/176 (93%), Positives = 170/176 (96%)

Query: 11  KKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELSDLIGAAMGNAASLEHILDAV 70
           +KIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVEL DLIGAAMGNA+SL+HILDAV
Sbjct: 13  RKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGNASSLDHILDAV 72

Query: 71  AIEGALRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLESHPDQPEWL 130
           AI GA+RPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLE HPDQPEWL
Sbjct: 73  AIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEGHPDQPEWL 132

Query: 131 SHVNASVLKVKLATAIIGISSIHLLKTFINANLYDVKTLLAQTGIHITFLLSAMAI 186
           SHVNASVLKVKLATAIIGISSIHLLKTFINANLYD KTL+AQTGIHI FL SAMAI
Sbjct: 133 SHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLFSAMAI 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,874,107
Number of extensions: 75967
Number of successful extensions: 252
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 2
Length of query: 613
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 522
Effective length of database: 1,188,985
Effective search space: 620650170
Effective search space used: 620650170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)