BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0235.0004.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310872|ref|YP_003774964.1| glutamate racemase [Herbaspiril...   315   3e-87

>gi|300310872|ref|YP_003774964.1| glutamate racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score =  315 bits (807), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/269 (65%), Positives = 205/269 (76%), Gaps = 8/269 (2%)

Query: 8   ATPMPADAHTDRDAPVGIFDSGIGGLSVLRHVRAALPQEHLLYFADSGYAPYGDKDEQQI 67
           ++PMP  A    DA +GIFDSGIGGLSVLRH+ AALP+E LLYFADSGYAPYGDK E QI
Sbjct: 19  SSPMPTAA----DAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEAQI 74

Query: 68  VERSLAIAGFLIGQGIKALVVACNTATAAAIQAIRLQWPALIVVGIEPGLKPAALHSKSG 127
           VERSLAIA FL+ Q +KALVVACNTATAAAIQAIR +WP L+VVGIEPGLKPAA  ++S 
Sbjct: 75  VERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTRSR 134

Query: 128 VVGVLATRSTLASARFIALREQIAAAGKVQFISQACVGLVDQIEKGELQSPATAALVDRY 187
            VGVLATRSTLAS RF  L+ Q+ A  +V+++ QACVGLVD IEKGEL SPAT  L++RY
Sbjct: 135 TVGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPATVQLLERY 194

Query: 188 VMPLIAQGADTLVLGCTHYPFVRELIESAARHAGCVAPLVIDTGEAVTRQLSRLLEAKSL 247
           + PL+ QGADTLVLGCTHYPFVR  IES  +      P +IDTG+AVTRQL RLLEA  L
Sbjct: 195 LAPLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLLEAGQL 254

Query: 248 MRSGDAAENDGTLVAYTTAGAGXFSGKFH 276
            ++G A+   G+L  +TTA        F 
Sbjct: 255 -QTGAAS---GSLAGFTTASRSTLENAFR 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 894,099
Number of extensions: 36328
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)