BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0234.0011.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310427|ref|YP_003774519.1| L-idonate 5-dehydrogenase [Herb...    54   7e-09

>gi|300310427|ref|YP_003774519.1| L-idonate 5-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 6/121 (4%)

Query: 1   VEADGISLDDAAMIEFLAIGAHAVKRGAVGPGANVLVVGAGPIGMAVMLFAKLKGAV-VT 59
           V AD +S  +AAM E L++  HAV+R     G  VLV G GPIG  V++ A+  GA+ V 
Sbjct: 139 VVADHVSDGEAAMAEPLSVALHAVRRAGPLVGKRVLVTGCGPIGALVVVAARRAGALEVV 198

Query: 60  ALDTRQDRLQFCRDALQVAQTVEVGPGDKEQLSK--MSNDEFFDVVFDATGNIKAMERGL 117
             D     LQ    ALQV     +   +     K   ++   FDV+F+A+GN +A+   L
Sbjct: 199 VTDVASMPLQ---AALQVGADSAINMAETPAALKAYAADKGTFDVLFEASGNERALVGAL 255

Query: 118 E 118
           E
Sbjct: 256 E 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 647,750
Number of extensions: 25961
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)