BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0234.0008.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312019|ref|YP_003776111.1| aryl-alcohol dehydrogenase [Her...    74   1e-14
gi|300312649|ref|YP_003776741.1| oxidoreductase protein [Herbasp...    63   3e-11

>gi|300312019|ref|YP_003776111.1| aryl-alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 136/324 (41%), Gaps = 66/324 (20%)

Query: 3   GAWDLGLRYFDTAPYYGSTLSEHRLGAALRERSRDEYVISTKVGRLMKPDAGVRPGDNDW 62
            A D G+ + DTA  YG   SE  +   L+ER  +   ++TK GR + P   V  G ND 
Sbjct: 41  AALDAGVSFIDTADVYGDGRSEQLIAQVLKERGGERPFVATKAGRRLSPH--VASGYNDR 98

Query: 63  AAPLPFRAHYDYSYGGILRSHEDSLQRLGTSRIDILFVHDIGRATHGEKHDHYWQQLTAG 122
           A    F               + SL+ LG   +D++         H    + Y+QQ    
Sbjct: 99  AQLSAF--------------IDRSLKNLGVDCLDLV-------QLHCPPTEVYYQQEV-- 135

Query: 123 GGFKALDELRSSGQVAAVGLGVNEWQIVHDCMQIFDLDCTLLAGRYTLLEQESLSPLLEA 182
             F  LD L ++G++   G+ V + +     ++  ++    +   + +  Q  +S  L+ 
Sbjct: 136 --FGHLDALVAAGKIRHYGVSVEKVEEALKAIEYPNVKSVQII--FNIFRQRPISLFLQE 191

Query: 183 CERQGNAIVIGGPFNSGILAGS------------RKFN-----------YADAPARI-VA 218
            +R+  A++   P  SG+L G             R+FN           ++  P  + +A
Sbjct: 192 AQRRDIAVIARVPLASGLLTGKMSAQTTFAADDHRQFNRHGEAFDVGETFSGVPYEVALA 251

Query: 219 RVEALEAVCREFSVPLAXLEAVCREFSAAALQFPMAHPAVVSCIPGGRDLAQLQQN-AEW 277
            VE + A+  +  VP+A            AL++ +    + + IPG R++AQ Q N A  
Sbjct: 252 AVEKIRALVPQ-GVPMAQF----------ALRWILMESGISTVIPGARNVAQAQSNSAAS 300

Query: 278 FDSPIPAELWQTLKQRGLLDDAAP 301
              PI AE+ Q L+    L D AP
Sbjct: 301 ALPPITAEVMQALRAI-YLHDIAP 323


>gi|300312649|ref|YP_003776741.1| oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 30/205 (14%)

Query: 1   VDGAWDLGLRYFDTAPYYGSTLSEHRLGAALRERSRDEYVISTKVGRLMKP-DAGVRPGD 59
           +D A +LG+   DTA  YG   +E  LG A++ R RD++ I+TK G    P D G R  D
Sbjct: 53  IDRALELGINLLDTADMYGPYTNEELLGRAIKGR-RDKFFIATKFGIRRDPSDPGARGVD 111

Query: 60  NDWAAPLPFRAHYDYSYGGILRSHEDSLQRLGTSRIDILFVHDIGRATHGEKHDHYWQQL 119
              A               I ++ E SL+RLG   ID+ + H I  AT  E        +
Sbjct: 112 GSPAY--------------IRQAVEGSLKRLGVETIDLYYQHRIDPATPIE--------V 149

Query: 120 TAGGGFKALDELRSSGQVAAVGLGVNEWQIVHDCMQIFDLDCTLLAGRYTLLEQESLSPL 179
           T G     L +L  +G++  +GL       +    ++  +  T L   Y+L  ++  + +
Sbjct: 150 TMG----VLADLVQAGKIRYIGLSEASAATLERAHRVHPV--TALQSEYSLWTRDPEAEV 203

Query: 180 LEACERQGNAIVIGGPFNSGILAGS 204
           L AC   G   V   P   G L G+
Sbjct: 204 LAACRTLGIGFVAYSPLGRGFLTGA 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,945
Number of extensions: 45942
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)