BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0234.0005.p (110 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 107 2e-25 gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [H... 105 7e-25 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 94 2e-21 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 92 1e-20 gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [H... 89 7e-20 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 107 bits (268), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 50/98 (51%), Positives = 69/98 (70%) Query: 2 KNIAIGKWLFRHSKIILFDEPTRGIDVGAKFAIYQLLDKLASEGIGVVLITSELPEIMGM 61 + I I KWL R I+ FDEPTRGIDVGAK IY+LLD LA +G +V+I+SELPE++ M Sbjct: 422 QKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRM 481 Query: 62 TDRVAVFHQGKISGIVNTKETSQEEIMHLASGRTTKQA 99 + RV V +G+I+G + + +QE+IM LA+ R + A Sbjct: 482 SHRVLVMCEGRITGELARADATQEKIMQLATQRESAVA 519 Score = 57.4 bits (137), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 53/92 (57%) Query: 4 IAIGKWLFRHSKIILFDEPTRGIDVGAKFAIYQLLDKLASEGIGVVLITSELPEIMGMTD 63 + I K L S++++ DEPT ++ +++++ L ++G+G+V I+ ++ E+ + D Sbjct: 169 VEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIAD 228 Query: 64 RVAVFHQGKISGIVNTKETSQEEIMHLASGRT 95 RV+V GK V +ETS + I+ + GR Sbjct: 229 RVSVMRDGKYIATVPMQETSMDTIISMMVGRA 260 >gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 105 bits (262), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%) Query: 2 KNIAIGKWLFRHSKIILFDEPTRGIDVGAKFAIYQLLDKLASEGIGVVLITSELPEIMGM 61 + + + KWLF ++++ DEPTRGIDVGAKF IY ++ KLA+EG +++I+SE+PE++GM Sbjct: 414 QKVVLSKWLFSQPEVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGM 473 Query: 62 TDRVAVFHQGKISGIVNTKETSQEEIMHLASGRTTKQAKNNDEPG 106 DR+ V ++G+ G + E +QE IM R + K DEPG Sbjct: 474 CDRIYVMNEGQFVGHLPKAEATQENIM-----RAIMRNKRIDEPG 513 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 94.4 bits (233), Expect = 2e-21, Method: Composition-based stats. Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 1/99 (1%) Query: 2 KNIAIGKWLFRHSKIILFDEPTRGIDVGAKFAIYQLLDKLASEGIGVVLITSELPEIMGM 61 + + I +W+ K+++FDEPTRGIDVGAK IYQL+ + ++G +++I+SELPE++GM Sbjct: 408 QKVVIARWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGM 467 Query: 62 TDRVAVFHQGKISGIVNTKETSQEEIM-HLASGRTTKQA 99 DRV VF G I + + + EEIM H +GR A Sbjct: 468 ADRVCVFRGGGIVATLEGEAVNAEEIMTHATTGRIRHAA 506 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 91.7 bits (226), Expect = 1e-20, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 65/91 (71%) Query: 2 KNIAIGKWLFRHSKIILFDEPTRGIDVGAKFAIYQLLDKLASEGIGVVLITSELPEIMGM 61 + + + +WL K+++ DEPTRG+D+ AK IYQL+ +LAS+G+ VV+I+SELPE++G+ Sbjct: 408 QKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGI 467 Query: 62 TDRVAVFHQGKISGIVNTKETSQEEIMHLAS 92 DRV V +G I+G + +QE IM LA+ Sbjct: 468 CDRVLVMREGMITGELAGAAITQENIMRLAT 498 Score = 53.5 bits (127), Expect = 4e-09, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 48/97 (49%) Query: 2 KNIAIGKWLFRHSKIILFDEPTRGIDVGAKFAIYQLLDKLASEGIGVVLITSELPEIMGM 61 + + I + L S+I++ DEPT + ++ ++ +L EG+ ++ I+ + E+ + Sbjct: 150 QQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVRRLRDEGLAIIYISHRMAEVYAL 209 Query: 62 TDRVAVFHQGKISGIVNTKETSQEEIMHLASGRTTKQ 98 DRV V G G + E E I+ + GR+ + Sbjct: 210 ADRVTVLRDGSFVGELVRDEIDSERIVQMMVGRSLSE 246 >gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 89.0 bits (219), Expect = 7e-20, Method: Composition-based stats. Identities = 43/98 (43%), Positives = 68/98 (69%), Gaps = 1/98 (1%) Query: 2 KNIAIGKWLFRHSKIILFDEPTRGIDVGAKFAIYQLLDKLASEGIGVVLITSELPEIMGM 61 + + I +WL+R I+LFDEPTRGID+GAK IY+L +LA++G G+++++S+L E+M + Sbjct: 412 QKVVIARWLYRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQI 471 Query: 62 TDRVAVFHQGKISGIVNTKETSQEEIMHLA-SGRTTKQ 98 DR+AV G+I+ + + SQE I+ A SG +Q Sbjct: 472 CDRIAVMSAGRIADTFSRDDWSQERILAAAFSGYVGRQ 509 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 334,326 Number of extensions: 11706 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 12 Length of query: 110 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 37 Effective length of database: 1,274,215 Effective search space: 47145955 Effective search space used: 47145955 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)