BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0234.0002.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310384|ref|YP_003774476.1| sugar ABC transporter periplasm...    65   2e-12
gi|300311608|ref|YP_003775700.1| sugar ABC transporter periplasm...    57   5e-10

>gi|300310384|ref|YP_003774476.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score = 65.1 bits (157), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 2/112 (1%)

Query: 8   TTDVLAANPDLKGIFGANEPTAVGMGRAIVQAGKAGKIVAVGFDGNEDLKNFVKDGTLYA 67
           T  +L A P +KGIFG NE +A+G+   + +  +  KI+ +G+D  +  K+ +++G +  
Sbjct: 202 TKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKR--KIIIIGYDSGKQQKDAIREGIMAG 259

Query: 68  TAVQGSYSMGSLGVKTVISLIEGKKVPAFVNTGVVIVTKANVDLPEAKNVLY 119
              Q    +G   V+  +  I+G+K+P  ++TG     K+N+D  +   VLY
Sbjct: 260 AITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKSNIDDAKIAAVLY 311


>gi|300311608|ref|YP_003775700.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 56.6 bits (135), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 11  VLAANPDLKGIFGANEPTAVGMGRAIVQAGKAGKIVAVGFDGNEDLKNFVKDGTLYATAV 70
           +L A+PD+K I   N+  A+G   AI  AGK GK+  VG+D    +K  +KDG + AT  
Sbjct: 215 ILNAHPDIKAILAGNDNMALGAVAAIRAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVD 274

Query: 71  QGSYSMGSLGVKTVISLIEGKKVPA----FVNTGVVIVTK 106
           Q +      G++T +  +  KK  +     V T V +VTK
Sbjct: 275 QFAQQQAVFGIETALKALSEKKPQSALGGVVETKVSLVTK 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 373,981
Number of extensions: 15431
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)