BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0233.0002.p (477 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311055|ref|YP_003775147.1| redox regulated molecular chape... 478 e-136 gi|300311056|ref|YP_003775148.1| carbonic anhydrase/acetyltransf... 244 2e-65 gi|300313410|ref|YP_003777502.1| carbonic anhydrase/acetyltransf... 90 4e-19 gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily ca... 76 6e-15 >gi|300311055|ref|YP_003775147.1| redox regulated molecular chaperone heat-shock-like protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 478 bits (1230), Expect = e-136, Method: Compositional matrix adjust. Identities = 227/290 (78%), Positives = 256/290 (88%) Query: 125 KEFPENSLAENAPVRGELVEISATWQQVLARRDYPVAVKALLGQMLSAAALLSANLKFNG 184 K+ + L +NAPVRGELVEIS TW+QV ARRDYPVAV+ LLG+ML+A+ALLSANLKFNG Sbjct: 2 KDTLQKFLVDNAPVRGELVEISDTWRQVQARRDYPVAVRTLLGEMLAASALLSANLKFNG 61 Query: 185 MVVMQIHGDGPVRLLVVECDSELRLRATAKLVEDADVADDATLMQLVNANGEGRFAITLD 244 M+VMQIHGDGPV+LLVVECDSEL+LRATAKL + A++ADDATL LVNANG GRF ITLD Sbjct: 62 MIVMQIHGDGPVKLLVVECDSELQLRATAKLADGAEIADDATLTDLVNANGHGRFVITLD 121 Query: 245 PKDKMPGQQAYQGVVPLDGDTVATVIENYMLRSEQLDTKLWLAADDKVSRGLLLQKLPNH 304 PKDK+PGQQAYQGVVPLDG++VATVIENYMLRSEQLDTKLWLAAD+ VSRGLLLQKLP+ Sbjct: 122 PKDKLPGQQAYQGVVPLDGESVATVIENYMLRSEQLDTKLWLAADENVSRGLLLQKLPSI 181 Query: 305 GGKDVGKAAPEEELETWNRLSMLGNTLRSEELLSTDIETLMHRLFWEETIRVFEPSHPEF 364 GG A PE ELE WN + MLG+TL+ EELLSTDI TLMHRLFWE+TIRVF+P HP+F Sbjct: 182 GGTAAPTAKPEGELEDWNHMVMLGDTLKREELLSTDIATLMHRLFWEQTIRVFDPVHPQF 241 Query: 365 HCTCSREKVGNMLKMLGQAEVEDALSTQEKLSVDCDFCGLHYEFDAVDCA 414 HC+CSREKVGNMLKMLGQ EV +ALS EKL++DCDFCG HYEFDAVDCA Sbjct: 242 HCSCSREKVGNMLKMLGQEEVAEALSQMEKLAIDCDFCGQHYEFDAVDCA 291 >gi|300311056|ref|YP_003775148.1| carbonic anhydrase/acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 174 Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 117/139 (84%), Positives = 129/139 (92%) Query: 1 MAIYKLEENTPEIAETAWVAESAVVVGKVKLEEHASVWFNVSIRGDNELITIGENSNVQE 60 MAIY+LE++ PEI +TA+VAES+ VVGKVK+E H+SVWFNV+IRGDNELITIGENSNVQE Sbjct: 1 MAIYQLEQDIPEIHDTAFVAESSTVVGKVKMEAHSSVWFNVAIRGDNELITIGENSNVQE 60 Query: 61 GAVLHTDVGYPMHIGKNVTVGHQAMLHGCTIGEGALIGIQAIVLNGAKIGKNSLVGAGAL 120 GAVLHTDVGYPM IGKNVTVGHQAMLHGCTIGEGALIGIQA+VLNGAKIGKN LVGAGAL Sbjct: 61 GAVLHTDVGYPMVIGKNVTVGHQAMLHGCTIGEGALIGIQAVVLNGAKIGKNCLVGAGAL 120 Query: 121 VTEGKEFPENSLAENAPVR 139 VTEGKEFP+NSL AP + Sbjct: 121 VTEGKEFPDNSLIIGAPAK 139 >gi|300313410|ref|YP_003777502.1| carbonic anhydrase/acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 200 Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 8/170 (4%) Query: 1 MAIYKLEENTPEIAETAWVAESAVVVGKVKLEEHASVWFNVSIRGDNELITIGENSNVQE 60 M Y +E P + +A+V +AV++G V + V +RGD I + +NVQ+ Sbjct: 1 MPCYSIEGVIPVVDPSAYVHPTAVLIGDVIVGPDCYVGPTACLRGDFGRIVLQRGANVQD 60 Query: 61 GAVLHTDVGYPMH---IGKNVTVGHQAMLHGCTIGEGALIGIQAIVLNGAKIGKNSLVGA 117 V+H G+P H + +N +GH A+LH CT+ AL+G+ A+V++ A +G+ ++V A Sbjct: 61 TCVIH---GFPGHDTVVEENGHIGHGAVLHSCTVRRDALVGMNAVVMDEAVVGEQAIVAA 117 Query: 118 GALVTEGKEFPENSLAENAPVR--GELVEISATWQQVLARRDYPVAVKAL 165 A V G + P +LA P + EL W+Q R + V+ L Sbjct: 118 CAFVRAGMQIPPRTLAAGLPAKVVRELTADEMAWKQAGTRTYQDLTVRCL 167 >gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily carbonic anhydrase/acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 186 Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 10/156 (6%) Query: 11 PEIAETAWVAESAVVVGKVKLEEHASVWFNVSIRGDN-------ELITIGENSNVQEGAV 63 P++ E+A+V +A++ GKV + E+ + IR D E I IG +SN+Q+G V Sbjct: 11 PQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIGAHSNIQDGVV 70 Query: 64 LHTDVGYPMHIGKNVTVGHQAMLHG-CTIGEGALIGIQAIVLNGAKIGKNSLVGAGALVT 122 +H+ G + IG+ ++ H+A++HG CT+G+ A IG +++ N IG +V A+V Sbjct: 71 IHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLFN-CSIGAGCVVRHNAVV- 128 Query: 123 EGKEFPENSLAENAPVRGELVEISATWQQVLARRDY 158 +G + P + G ++S + +A ++ Sbjct: 129 DGCDLPPGFYVPSTERIGAKTDLSTIPRVTVAASEF 164 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,396,883 Number of extensions: 54671 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 4 Length of query: 477 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 388 Effective length of database: 1,198,455 Effective search space: 465000540 Effective search space used: 465000540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)