BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0233.0001.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...   117   2e-28
gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...    80   5e-17

>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  117 bits (293), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 63/78 (80%)

Query: 26  FTSSGEIGAFGVEPELYTEKKRNRAATNTHFNRERNVVSFSASTTTYPRAGGEQDRASLI 85
           F+S GE+ A+GV P LYTEKK+ R+ATNTHFNR  + +SFSAS T YPR GGEQDR SLI
Sbjct: 92  FSSEGELDAWGVSPTLYTEKKKFRSATNTHFNRNGDSISFSASETRYPRRGGEQDRGSLI 151

Query: 86  WQLAAIGRGDSTKFVPGA 103
           WQLAAIGRGD  +F PGA
Sbjct: 152 WQLAAIGRGDPAQFQPGA 169


>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 79.7 bits (195), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 50/77 (64%)

Query: 27  TSSGEIGAFGVEPELYTEKKRNRAATNTHFNRERNVVSFSASTTTYPRAGGEQDRASLIW 86
           TS G + A+G+ P+ + EK+  R  + T FNRE+N ++F+ S  +YP  GGEQDR S+ W
Sbjct: 91  TSEGAVDAYGLAPDRFVEKRLRREPSTTTFNREQNKITFTQSAESYPLQGGEQDRTSITW 150

Query: 87  QLAAIGRGDSTKFVPGA 103
           Q  AI R ++ K  PG+
Sbjct: 151 QFVAIARANAAKMKPGS 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.125    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 349,464
Number of extensions: 11647
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)