BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0004.p (119 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance ... 119 9e-29 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 112 7e-27 gi|300311799|ref|YP_003775891.1| two component heavy metal respo... 102 8e-24 gi|300313680|ref|YP_003777772.1| two component response regulato... 75 2e-15 gi|300313818|ref|YP_003777910.1| two component transcription reg... 72 2e-14 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 119 bits (297), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 55/103 (53%), Positives = 80/103 (77%), Gaps = 6/103 (5%) Query: 1 VVEDEPKTGEYLQRGLTEAGFIVDLAKXFGAKNGLDGYHLAMTEPYDLVILDVMLPDVDG 60 V+ED+PKTG+YL++GL E+G+ VDLA+ NG DG H+A+ + YDLV+LDVMLP +DG Sbjct: 5 VIEDDPKTGDYLRKGLRESGYAVDLAR-----NGADGLHMALEQDYDLVVLDVMLPGLDG 59 Query: 61 WRIVQSLREAQKAVPVLFLTARDSVADRVKGLEMGASPPPPPP 103 W+++ +LR +++ +PVLFLTARD V DR++GL++GA P Sbjct: 60 WQVMSALR-SKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKP 101 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 112 bits (280), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 6/103 (5%) Query: 1 VVEDEPKTGEYLQRGLTEAGFIVDLAKXFGAKNGLDGYHLAMTEPYDLVILDVMLPDVDG 60 +VEDEPK+G+YL+RGLTE+GF+VD + G+DG H A T Y L+ILDVMLP ++G Sbjct: 5 LVEDEPKSGDYLRRGLTESGFVVD-----WVQTGVDGLHNARTLDYKLIILDVMLPGMNG 59 Query: 61 WRIVQSLREAQKAVPVLFLTARDSVADRVKGLEMGASPPPPPP 103 W I++ LR PVLFLTARD V DRVKGLE+GA P Sbjct: 60 WDILRELRRTHDT-PVLFLTARDEVEDRVKGLELGADDYLVKP 101 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 102 bits (254), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 6/103 (5%) Query: 1 VVEDEPKTGEYLQRGLTEAGFIVDLAKXFGAKNGLDGYHLAMTEPYDLVILDVMLPDVDG 60 +VEDE K EYL +GLTE G VDLA NG+DG HLA+ YD+++LDVMLP +DG Sbjct: 5 IVEDEQKMSEYLCKGLTEQGCAVDLAA-----NGVDGQHLAIEHDYDVIVLDVMLPGLDG 59 Query: 61 WRIVQSLREAQKAVPVLFLTARDSVADRVKGLEMGASPPPPPP 103 + ++++LR+ K PV+ LTARDSV DR+KGL GA P Sbjct: 60 FSVLRALRKV-KETPVIMLTARDSVEDRIKGLHDGADDYLIKP 101 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 74.7 bits (182), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 5/96 (5%) Query: 1 VVEDEPKTGEYLQRGLTEAGFIVDLAKXFGAKNGLDGYHLAMTEPYDLVILDVMLPDVDG 60 +VED+P GE +++GL + GF +D + +G TE Y +++LD+ LP DG Sbjct: 5 LVEDDPMVGEAVRKGLRQDGFAIDWVQ-----DGKSADVALRTEDYAMLLLDLGLPQKDG 59 Query: 61 WRIVQSLREAQKAVPVLFLTARDSVADRVKGLEMGA 96 ++++LRE A+PVL TARD+VADRV GL+ GA Sbjct: 60 LAVLRTLRERGNAIPVLITTARDAVADRVAGLDAGA 95 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 5/103 (4%) Query: 1 VVEDEPKTGEYLQRGLTEAGFIVDLAKXFGAKNGLDGYHLAMTEPYDLVILDVMLPDVDG 60 +VED + +L + + +A V+ A NG D L +T+ Y LVILD+ LP +DG Sbjct: 5 LVEDHIELSRWLAKAMRDAHLTVECAH-----NGADADSLLLTQDYALVILDLTLPRMDG 59 Query: 61 WRIVQSLREAQKAVPVLFLTARDSVADRVKGLEMGASPPPPPP 103 +++ +R PVL LTAR +ADRV GL MGA P Sbjct: 60 MEVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKP 102 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 332,593 Number of extensions: 11822 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 21 Length of query: 119 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 45 Effective length of database: 1,269,480 Effective search space: 57126600 Effective search space used: 57126600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)