BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0075.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311557|ref|YP_003775649.1| outer membrane porin [Herbaspir...   127   3e-31
gi|300313580|ref|YP_003777672.1| outer membrane porin [Herbaspir...    85   1e-18
gi|300310676|ref|YP_003774768.1| outer membrane protein (porin) ...    84   4e-18
gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC fami...    84   4e-18
gi|300313813|ref|YP_003777905.1| transmembrane outer membrane po...    82   1e-17

>gi|300311557|ref|YP_003775649.1| outer membrane porin
          [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score =  127 bits (318), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 68/73 (93%)

Query: 19 SALAQSNVTIYGIVDTSIRYVSNDNAQGNSNLRMDNGAISNSRLGFKGVEDLGGGLKAEF 78
          +A AQSNVTIYGIVDTSI Y+SN NAQGNSN+RMDNGAI+NSR+GFKG EDLGGGLKA F
Sbjct: 18 AAFAQSNVTIYGIVDTSIHYLSNANAQGNSNVRMDNGAIANSRIGFKGTEDLGGGLKAMF 77

Query: 79 RLENGFNSDTGAL 91
          +LENGF+SDTGA+
Sbjct: 78 QLENGFSSDTGAM 90


>gi|300313580|ref|YP_003777672.1| outer membrane porin
          [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 63/98 (64%), Gaps = 9/98 (9%)

Query: 1  MKKTYLALAVAALAGTSISALAQSNVTIYGIVDTSIRYVS-------NDNAQGNSNLRMD 53
          MKK+ LALAV  L   + +A AQS+VTIYGIVDT I Y S       N NA   S   ++
Sbjct: 1  MKKSLLALAV--LGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGIN 58

Query: 54 NGAISNSRLGFKGVEDLGGGLKAEFRLENGFNSDTGAL 91
          +G I  SR+GFKGVEDLGGGL A F LE GF SD G L
Sbjct: 59 SGVIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGL 96


>gi|300310676|ref|YP_003774768.1| outer membrane protein (porin)
          signal peptide protein [Herbaspirillum seropedicae
          SmR1]
          Length = 352

 Score = 83.6 bits (205), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 5/94 (5%)

Query: 1  MKKTYLALAVAALAGTSISALAQSNVTIYGIVDTSIRYVSNDNAQGNSN---LRMDNGAI 57
          MKKT L  A+  LAG + +A AQS+V+IYG++D  + Y S+    G      LRMD+G  
Sbjct: 1  MKKTLLVAAM--LAGGATTAHAQSSVSIYGLIDLGLTYYSSAPKSGGGGARLLRMDSGIA 58

Query: 58 SNSRLGFKGVEDLGGGLKAEFRLENGFNSDTGAL 91
            SR+GFKG EDLGGG+ A F LE GF +D G+L
Sbjct: 59 QGSRIGFKGTEDLGGGMNAFFTLETGFGADDGSL 92


>gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC
          family protein [Herbaspirillum seropedicae SmR1]
          Length = 346

 Score = 83.6 bits (205), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 67/94 (71%), Gaps = 10/94 (10%)

Query: 1  MKKTYLALAVAAL--AGTSISALAQSNVTIYGIVDTSIRYVSNDNAQGNSNL-RMDNGAI 57
          MKK + A+ VA+L  AG    ALAQSNVT+YG++DT + Y    NA G  ++  +D+G  
Sbjct: 1  MKKAW-AVGVASLLCAG---GALAQSNVTLYGVIDTYMGYT---NATGKGSVASLDSGGY 53

Query: 58 SNSRLGFKGVEDLGGGLKAEFRLENGFNSDTGAL 91
            SR+GFKG EDLGGGL+A F++ENGF SD+GA+
Sbjct: 54 QASRVGFKGSEDLGGGLRANFQMENGFASDSGAM 87


>gi|300313813|ref|YP_003777905.1| transmembrane outer membrane
          porin signal peptide protein [Herbaspirillum
          seropedicae SmR1]
          Length = 354

 Score = 82.0 bits (201), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 53/74 (71%), Gaps = 1/74 (1%)

Query: 19 SALAQSNVTIYGIVDTSIRYVSNDNAQG-NSNLRMDNGAISNSRLGFKGVEDLGGGLKAE 77
          S  AQS+VTIYG+VDT + Y++N    G  S  RM +GA + SR+GF+G EDLGGGLKA 
Sbjct: 18 SVQAQSSVTIYGLVDTGVEYLNNAGPNGAGSVTRMTSGATNTSRIGFRGTEDLGGGLKAL 77

Query: 78 FRLENGFNSDTGAL 91
          F+LENGF  D G+ 
Sbjct: 78 FQLENGFKLDNGSF 91


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 298,337
Number of extensions: 9817
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 13
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 13
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)