BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0074.p
         (73 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome...   132   5e-33
gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome...    55   8e-10

>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  132 bits (332), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 70/73 (95%)

Query: 1   VKPFSDAMVALKKGDITETPVKTQFGYHVIKLEDTRPAKVPTLEEVKPQIAEALQQKKLQ 60
           VKPFSDAMVALKKG++T TPV+TQFG+HVIKLED RPAKVPTL+EVKPQIAEALQQKKLQ
Sbjct: 186 VKPFSDAMVALKKGEVTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQQKKLQ 245

Query: 61  AYQEELRKKAKVQ 73
           AYQE+LR KAKVQ
Sbjct: 246 AYQEQLRAKAKVQ 258


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans
           isomerase D [Herbaspirillum seropedicae SmR1]
          Length = 639

 Score = 55.5 bits (132), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 1   VKPFSDAMVALKKGDITETPVKTQFGYHVIKLEDTRPAKVPTLEEVKPQIAEALQQK 57
           VKPF DA  +LK+G+I++ PV++ FGYH+I++   +PA V  LE VK +I   ++++
Sbjct: 336 VKPFEDAAFSLKQGEISD-PVQSDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQ 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.128    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 195,681
Number of extensions: 5959
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 73
Length of database: 1,619,870
Length adjustment: 44
Effective length of query: 29
Effective length of database: 1,411,530
Effective search space: 40934370
Effective search space used: 40934370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 123 (52.0 bits)