BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0073.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A...   288   1e-79
gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A...   104   3e-24
gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A...   102   2e-23

>gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score =  288 bits (738), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/165 (83%), Positives = 152/165 (92%)

Query: 1   LSALRSGQIDAIANLDPVISMLEQKNEIKTIADTRTLKDTNAVFGGPMPAATLYAPEAFI 60
           +SA+RSGQIDAIANLDPVISMLEQ  EIKTIADTRTLKDTN VFGGPMPAATLYAP AFI
Sbjct: 181 ISAVRSGQIDAIANLDPVISMLEQSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAAFI 240

Query: 61  KKYPNTTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDG 120
           +KYPNTTQALTNAMVRALKWIQ+AGPSDIIKAVPESYLLGDR+LYI AF+KVR+A+SPDG
Sbjct: 241 QKYPNTTQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDG 300

Query: 121 IFPDAGPATALRTLQAFEPDLATKKIDLSRTYTNEFAKKANAKHK 165
            FP  GP TALRTL+AFEP LA K+IDLS+T+TN F +KANAK+K
Sbjct: 301 YFPPGGPDTALRTLKAFEPSLADKQIDLSKTFTNSFVQKANAKYK 345


>gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 353

 Score =  104 bits (260), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%)

Query: 1   LSALRSGQIDAIANLDPVISMLEQKNEIKTIADTRTLKDTNAVFGGPMPAATLYAPEAFI 60
           ++A++  ++D     +P  S+L      K + D  ++  T A  GG  PA++LY   +++
Sbjct: 193 IAAMKQKRVDVAWTTEPTTSILLASGAAKVLVDMSSVDGTKAALGGLYPASSLYVHRSWM 252

Query: 61  KKYPNTTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDG 120
             +   +Q L    V+ L++IQ     DI   +P+ Y  G +A+Y+ A        SPDG
Sbjct: 253 NSHKAESQKLARVFVKTLRYIQTHSAEDIADKMPKDYYGGSKAIYVQALKASLPMYSPDG 312

Query: 121 IFPDAGPATALRTLQAFEPDLATKKIDLSRTYTNEF 156
             P  GP   L+ +  F P++  K IDLS+TYTNEF
Sbjct: 313 KMPAGGPEQVLKVMAGFNPNIKGKNIDLSKTYTNEF 348


>gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 337

 Score =  102 bits (253), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 82/156 (52%)

Query: 1   LSALRSGQIDAIANLDPVISMLEQKNEIKTIADTRTLKDTNAVFGGPMPAATLYAPEAFI 60
           ++A++ G+IDA    +P  S L +  + + + D RT++ T    GG  PA+++Y   +++
Sbjct: 177 IAAMKQGRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWL 236

Query: 61  KKYPNTTQALTNAMVRALKWIQQAGPSDIIKAVPESYLLGDRALYISAFLKVREAMSPDG 120
             +    Q L  A V+ L++IQ      I   +P+ Y   ++ LYI A        S DG
Sbjct: 237 NSHKEDAQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALTNSLPMYSQDG 296

Query: 121 IFPDAGPATALRTLQAFEPDLATKKIDLSRTYTNEF 156
             P  GP T L  L  F P++  K +DLS+TYT+EF
Sbjct: 297 KMPKGGPQTVLAVLSGFNPNVKGKHVDLSKTYTDEF 332


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 481,831
Number of extensions: 18046
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 3
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)