BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0071.p
         (91 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311559|ref|YP_003775651.1| stress-induced morphogen protei...   103   4e-24

>gi|300311559|ref|YP_003775651.1| stress-induced morphogen protein
          [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  103 bits (256), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 72/89 (80%)

Query: 3  ARPDVIREKLLAAFTPSECLVEDESALHAGHAGAASGGGHYRVRLISAAFEGKNRLIRHR 62
           R   I E+L A F+P  CLVEDESA HAGHAGAASGGGHYR+RL+S  FEGKNRL RHR
Sbjct: 6  TRVQRITERLTATFSPQVCLVEDESAQHAGHAGAASGGGHYRIRLVSDLFEGKNRLNRHR 65

Query: 63 LVYDCLADMMHKDIHALAITAIAPSEIAN 91
          LVYDCL+D+M ++IHALAI A++PSE  N
Sbjct: 66 LVYDCLSDLMQQEIHALAIVALSPSEATN 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 205,800
Number of extensions: 4703
Number of successful extensions: 14
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 91
Length of database: 1,619,870
Length adjustment: 61
Effective length of query: 30
Effective length of database: 1,331,035
Effective search space: 39931050
Effective search space used: 39931050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)