BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0067.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247...   320   7e-89

>gi|300311562|ref|YP_003775654.1| hypothetical protein Hsero_2247
           [Herbaspirillum seropedicae SmR1]
          Length = 495

 Score =  320 bits (821), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 172/207 (83%), Gaps = 1/207 (0%)

Query: 27  FANAFAELPPAFFTRLQPTPLPQPYLVGISADAAALVGIDPATAGSESFIDVFTGNVIAQ 86
           F N FAELPPAF TRLQPTPLP PYLVG S DAAA + +    A    F+D+F GN IA 
Sbjct: 14  FGNRFAELPPAFHTRLQPTPLPAPYLVGFSEDAAASIALPRPQADDGDFLDIFAGNRIAP 73

Query: 87  HSKPLAAVYSGHQFGVWAGQLGDGRAILLGDLPARDG-GRMEIQLKGAGQTPYSRMGDGR 145
            S PL+AVYSGHQFGVWAGQLGDGRAI LGDLPA DG GR+E+QLKGAG TPYSRMGDGR
Sbjct: 74  GSTPLSAVYSGHQFGVWAGQLGDGRAITLGDLPAADGAGRIELQLKGAGPTPYSRMGDGR 133

Query: 146 AVLRSSIREFLCSEAMAGLGIPTTRALCVTGSDQQVRRETLETTAVVTRMSPSFIRFGSF 205
           AVLRSSIREFLCSEAMA LGIPTTRAL V GSDQ+V RET ET AVVTRM+PSFIRFGSF
Sbjct: 134 AVLRSSIREFLCSEAMAALGIPTTRALTVIGSDQRVLRETAETAAVVTRMAPSFIRFGSF 193

Query: 206 EHWYYNKRHDELKLLADNVIANFYPEL 232
           EHWYYN+R D+LKLLAD V+  FYPEL
Sbjct: 194 EHWYYNQRFDDLKLLADTVLEQFYPEL 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,090,804
Number of extensions: 53142
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)