BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0060.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine...   356   1e-99
gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine...   121   6e-29
gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine...    80   2e-16

>gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  356 bits (913), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/188 (92%), Positives = 180/188 (95%)

Query: 1   MTTTTPSSGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGVGDPLRQWRVLKDG 60
           MTT T   GPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPG GDPLRQWRVLKDG
Sbjct: 1   MTTGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDG 60

Query: 61  TSLWWSVQARNKKSLTLNMKDPQAQDIARKLALEADIIIENYRPGVLEKWNLGYEDLKKL 120
           TSLWWSVQARNKKS+TLNMKD +AQ+IARKLALEAD+IIENYRPGVLEKW LGYEDLK+L
Sbjct: 61  TSLWWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQL 120

Query: 121 NPATIMVRLSGYGQTGPLKDLPGFGAIGESMGGIRYVSGHQDRPPVRIGISIGDSVAALH 180
           NPATIMVRLSGYGQTGPL+DLPGFGAIGESMGGIRYVSGH DRPPVRIGISIGDS+AALH
Sbjct: 121 NPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALH 180

Query: 181 GVIGAMMA 188
           GVIGAMMA
Sbjct: 181 GVIGAMMA 188


>gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  121 bits (303), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 1/184 (0%)

Query: 5   TPSSGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGVGDPLRQWRVLKDGTSLW 64
           +PS  PL GI V+ L   IA PFC+R LA+ GA VIK+E PGVGD  R +    +G S  
Sbjct: 2   SPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSH 61

Query: 65  WSVQARNKKSLTLNMKDPQAQDIARKLALEADIIIENYRPGVLEKWNLGYEDLKKLNPAT 124
           +    R+K+SLTLN+KD + + I  +L  +AD++++N  PG      L  + L   +P  
Sbjct: 62  FVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRL 121

Query: 125 IMVRLSGYGQTGPLKDLPGFGAIGESMGGIRYVSGHQDRPPVRIGISIGDSVAALHGVIG 184
           I+  +SGYG+ GP +D   +  + +S  G   V+G  D   V+ G SI D  A ++    
Sbjct: 122 IVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPD-DVVKAGCSIADIAAGMYAYSN 180

Query: 185 AMMA 188
            + A
Sbjct: 181 ILAA 184


>gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 12/145 (8%)

Query: 10  PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGVGDPLRQWRVLKDGTSLWWSVQA 69
           PL GI+VL+L  ++AGP  +R LA  GA+V++++  G  +P     V+            
Sbjct: 207 PLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVL----------- 255

Query: 70  RNKKSLTLNMKDPQAQDIARKLALEADIIIENYRPGVLEKWNLGYEDLKKLNPATIMVRL 129
             K+   LN+KDP   D  R+L   ADI++  YR   L K  L     ++LNPA I V L
Sbjct: 256 -GKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVSL 314

Query: 130 SGYGQTGPLKDLPGFGAIGESMGGI 154
             YG +G  +   GF ++ +   GI
Sbjct: 315 DAYGWSGAWQCRRGFDSLIQMSTGI 339


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 802,895
Number of extensions: 32947
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)