BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0059.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311616|ref|YP_003775708.1| hypothetical protein Hsero_2301...   353   9e-99

>gi|300311616|ref|YP_003775708.1| hypothetical protein Hsero_2301
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score =  353 bits (905), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 165/253 (65%), Positives = 193/253 (76%), Gaps = 1/253 (0%)

Query: 1   MWHGGGLAGTTWETKPDGAPGWQQFFLTQGHTVYVTDAVERGRASWSRYPEVYKTEPFFR 60
           MWHGGGL+G TWE+ PDG PGWQ FFL  GH VYV+DAVERGRASW+RYPE+Y++EP FR
Sbjct: 99  MWHGGGLSGVTWESTPDGRPGWQMFFLRAGHDVYVSDAVERGRASWARYPELYRSEPVFR 158

Query: 61  TKQEGWELFRIGGAGSYDSDPAKRIAYPGTQFPVAAYDQFSKQGIPRWATNDAATQTAYD 120
           TK+E WELFRIG AGSY  D A R AYP TQFPVAA+DQF KQG+PRW TNDAAT+ AYD
Sbjct: 159 TKKEAWELFRIGPAGSYQ-DAAHRSAYPDTQFPVAAFDQFMKQGVPRWLTNDAATEAAYD 217

Query: 121 ALVQKVCPCVIVVHSQGGNFAINAALHAPDKIKAIIAVEGSGAPDPDKVDISALKNIPFL 180
           ALVQ+VCPCV++VHSQG  FA   A   P+KIKA++ VE SGA DPDKVD++ L  +P L
Sbjct: 218 ALVQRVCPCVLMVHSQGSTFAYTLANRYPEKIKAVVGVEPSGALDPDKVDLTPLSRVPLL 277

Query: 181 FVWGDFIDQNTSWKQYIVAPNKFQKALRAQGGVADRLDLPQHGIKGNSHMLMMDRNSDQV 240
           FVWGD I     W+       K   AL+A+GG AD +DLP  GI GNSH++MMD NSDQ+
Sbjct: 278 FVWGDKIAATPRWQGIQAPMKKMIAALKAKGGRADEIDLPARGISGNSHLMMMDANSDQI 337

Query: 241 AALVQAWMDKNGL 253
           AALVQ W+   GL
Sbjct: 338 AALVQDWLVAQGL 350


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 937,621
Number of extensions: 39123
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)