BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0053.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase [...   190   1e-49

>gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score =  190 bits (482), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 132/206 (64%), Gaps = 6/206 (2%)

Query: 1   LWPLSREQYPKQLLPLVGAETMLQATALRVQATGAAYSLVDAPVVVCNEEYRFITAEQLR 60
           LWPLSR  YPKQLLPLV  +TMLQ T  RV A   A     AP+VVC  E+RF+ AEQLR
Sbjct: 16  LWPLSRAAYPKQLLPLVSEQTMLQETVARVCAWPEAL----APLVVCGNEHRFMIAEQLR 71

Query: 61  AIGKESKHIVLEPVGRNTAPALTLAALLAAKNGDDPVLLVMPADHVIRDVDAFRSAIAQG 120
            +      IVLEP G+NTAPA+  AAL   +   D V+LV+PADHVI + +AF  A+   
Sbjct: 72  EMDVRPHAIVLEPQGKNTAPAVAAAALQLMRQDPDAVMLVLPADHVITNREAFHEAVRAA 131

Query: 121 VPHAAAGAMVTFGIVADRPETGYGYIQRGAQTDDA--YAITRFVEKPDAATAQAYVDSGD 178
           +     GA+VTFGI   +PETGYGYI RGA   D   +A+ RFVEKPD   AQ +V  G 
Sbjct: 132 MRSVEQGALVTFGITPSKPETGYGYILRGAAHGDTGNFAVERFVEKPDLERAQGFVADGR 191

Query: 179 YLWNSGLFMMRASVWLRAIERFQPAM 204
           Y WNSG+F++RA  +L  +E  +P +
Sbjct: 192 YYWNSGMFLLRARDYLEELELHRPLI 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 803,929
Number of extensions: 32387
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)