BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0047.p
         (129 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase [He...   125   7e-31
gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase [He...   100   3e-23

>gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  125 bits (315), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 77/106 (72%), Gaps = 7/106 (6%)

Query: 10  AYGQELHILRAXARAYGQELHILRAVEQVNNNQKHVLGKKVVARFGENLQGRHFAIWGLA 69
            + +++  L   AR Y Q L ILRAVEQVN+ QKHVLGKKVVARFGE+L G+HFA+WGLA
Sbjct: 271 CFPKDVQALERTARDYDQSLLILRAVEQVNDLQKHVLGKKVVARFGEDLAGKHFALWGLA 330

Query: 70  FKPNTDDMREASSRVLLGELIARARARGXIFDGRNLFEPQVMADAS 115
           FKPNTDDMREASSRVL+GEL+ R            +++P  M +AS
Sbjct: 331 FKPNTDDMREASSRVLIGELVRRGATVA-------VYDPVAMKEAS 369



 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 28/30 (93%)

Query: 99  IFDGRNLFEPQVMADASIEYHGIGRSILTK 128
           IFDGRNLF+PQ+MAD+ IEY+GIGRS+L +
Sbjct: 428 IFDGRNLFDPQLMADSGIEYYGIGRSLLAR 457


>gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  100 bits (249), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 11  YGQELHILRAXARAYGQELHILRAVEQVNNNQKHVLGKKVVARFGENLQGRHFAIWGLAF 70
           + +++  L   A  +GQEL IL +VE VN+ QK VL KK+VAR GE+L G+ FA+WGLAF
Sbjct: 272 FPKDVQALARTASEHGQELEILGSVESVNDKQKQVLLKKIVARLGEDLSGKTFAVWGLAF 331

Query: 71  KPNTDDMREASSRVLLGELIARARARGXIFD 101
           KPNTDDMR A SRV++ EL+ R  A+  ++D
Sbjct: 332 KPNTDDMRAAPSRVIVRELLQRG-AKVQVYD 361


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 391,561
Number of extensions: 13790
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 3
Length of query: 129
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,264,745
Effective search space: 68296230
Effective search space used: 68296230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)