BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0046.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase [He...   125   1e-30
gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase [He...   109   4e-26

>gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  125 bits (313), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/61 (93%), Positives = 58/61 (95%)

Query: 1  MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQSKVDILNNGGIPIHEPGLEDVVARNRA 60
          MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQ KVDILNNGGIPIHEPGLE+VV RNRA
Sbjct: 1  MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVERNRA 60

Query: 61 G 61
           
Sbjct: 61 A 61


>gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  109 bits (273), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/60 (76%), Positives = 58/60 (96%)

Query: 1  MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQSKVDILNNGGIPIHEPGLEDVVARNRA 60
          M IT+IGTGYVGLVTGACLAELGN VFCLDVD++K++ILN+GG+PI+EPGL++++ARNRA
Sbjct: 1  MNITVIGTGYVGLVTGACLAELGNKVFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA 60


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 352,662
Number of extensions: 12905
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)