BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0039.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312986|ref|YP_003777078.1| prephenate dehydrogenase [Herba...   261   8e-71
gi|300312985|ref|YP_003777077.1| 5-enolpyruvylshikimate-3-phosph...   233   2e-62

>gi|300312986|ref|YP_003777078.1| prephenate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  261 bits (666), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 143/167 (85%)

Query: 206 SRAALGDKIGQFVPGHPIAGREQNGPDAALADLYVGKKTVITALDENSEQDVERVAQAWQ 265
           +R ALGD+I QF+P HPIAGRE++GP+AALA+LY GKK VITAL EN   DVE VA AW+
Sbjct: 106 ARMALGDRIVQFIPAHPIAGREKHGPEAALAELYEGKKVVITALPENDAADVEIVAAAWR 165

Query: 266 ACGAVIHRLSPQEHDAVFASVSHLPHLLAYALVDDIASKPHAPILFQYAASGFRDFTRIA 325
           ACGAVIHRLSPQEHDAVFASVSHLPH+LA+ALVDDIA+KPHA  LFQYAASGFRDFTRIA
Sbjct: 166 ACGAVIHRLSPQEHDAVFASVSHLPHVLAFALVDDIAAKPHAATLFQYAASGFRDFTRIA 225

Query: 326 GSSPEMWRDISLANRAALLHELDAYLVQLIRMRKMLVERDSDGLEKI 372
            SSPEMWRDI+LANR ALL E+DAYL+QL  +R M+   D  G+EKI
Sbjct: 226 ASSPEMWRDITLANRDALLTEVDAYLLQLQNIRAMIAAGDGPGIEKI 272


>gi|300312985|ref|YP_003777077.1| 5-enolpyruvylshikimate-3-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  233 bits (594), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/155 (78%), Positives = 131/155 (84%), Gaps = 2/155 (1%)

Query: 69  MKPASYPRHIDLNPVAHVQGTVKLPGSKSISNRILLLAALSRGTTKIMDLLASDDTLVML 128
           MK  SYPRHIDL PV HVQGTVKLPGSKSISNRILLLAALS GTT+I DLLASDDTLVML
Sbjct: 3   MKQPSYPRHIDLAPVHHVQGTVKLPGSKSISNRILLLAALSGGTTRIFDLLASDDTLVML 62

Query: 129 MALQQLGVKWEQVDGTQDYIVHGVDGVLPVHQADLFMGNAGTAIRPLTAALAVIGGDYTL 188
           MALQ LGVKWEQ++GTQDYIVHGV+GVLPVHQADLFMGNAGTAIRPLTAALAV+GGDYTL
Sbjct: 63  MALQTLGVKWEQIEGTQDYIVHGVNGVLPVHQADLFMGNAGTAIRPLTAALAVLGGDYTL 122

Query: 189 HGVPRMALGDKIGQFPXSRAALGDKIGQF-VPGHP 222
           HGVPRM     IG    +  A+G +I     PG+P
Sbjct: 123 HGVPRMH-ERPIGDLVDALNAVGMRIDYTGNPGYP 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,238,259
Number of extensions: 53506
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)