BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0038.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans...   114   9e-27
gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans...   103   8e-24

>gi|300313983|ref|YP_003778075.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score =  114 bits (284), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 10/212 (4%)

Query: 12  VFIANPNNPTGTFLPAAELEAFLKAVPQHVVVVIDEAYNEYLSADLQYESTDWVRTFPNL 71
           +   NPN PTG  L  A++E  L+  P+ VVVV DEAY ++        +   V+ +PNL
Sbjct: 154 IIFPNPNAPTGCLLGLADVERILQGNPERVVVV-DEAYIDFGGQ----SAIPLVQRYPNL 208

Query: 72  IVSRTMSKAYGLAGLRVGFAIGQPGVTDLLNRIRQPFNVNSL---AQAAAVAALTDKAFL 128
           +V +T+SK+  LAG+RVGFA+G   + D L R++  FN   L   A A A AA+ D+ + 
Sbjct: 209 LVVQTLSKSRALAGMRVGFAVGHADLIDALERVKNSFNSYPLDRPAIAGATAAIEDEDYF 268

Query: 129 QKSAEVNAQGYKQLIQAFDSLGLTYVPSYGNFVLVKVGDDDGAGARVNLALLRKGIIVRP 188
           +K+  +       L      LG   +PS  NF+ V+    D A     L     GIIVR 
Sbjct: 269 RKTCNMVIASRTALAAQLAGLGFQVLPSAANFLFVRHPQHDAAQLAAALRA--DGIIVRH 326

Query: 189 VGNYGLPQWLRVTVGLPEENAAFIAALKTILG 220
             +  + Q+LR+T+G  E+    + AL+  LG
Sbjct: 327 FKSERISQFLRITIGTDEDCGVLVEALRRHLG 358


>gi|300313353|ref|YP_003777445.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 372

 Score =  103 bits (258), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 12/222 (5%)

Query: 1   MAAAIADDTRLVFIANPNNPTGTFLPAAELEAFLKAVPQHVVVVIDEAYNEYLSADLQYE 60
           +AA  A    + ++  PNNPTGT    A++   ++A   + +VV+DEAY  + ++ L   
Sbjct: 157 LAAMEAHKPVITWLGYPNNPTGTLYEMADVLRIVEAAAPYGLVVVDEAYQPFAASTLM-- 214

Query: 61  STDWVRTFPNLIVSRTMSKAYGLAGLRVGFAIGQPGVTDLLNRIRQPFNVNSLAQAAAVA 120
               +    NL++ RT+SK  GLAG+R+G+    P +   L+++R P+NVN L +AAA+ 
Sbjct: 215 --PALPQHNNLVLMRTVSK-LGLAGIRLGYLSAAPALLRELDKVRPPYNVNVLTEAAALF 271

Query: 121 ALTDKAFLQKSAEVNAQGYKQLIQAFDSL-GLTYVPSYGNFVLVKVGDDDGAGARVNLAL 179
            L     LQ  A    Q    L     +L G+   PS  NF+L++V D D    +V  +L
Sbjct: 272 MLEHLDVLQAQAARLRQARSALAAELAALDGVQVFPSAANFLLIRVPDAD----KVCASL 327

Query: 180 LRKGIIVRPVGNYG--LPQWLRVTVGLPEENAAFIAALKTIL 219
           L   ++V+  G     L   LR+TV   +ENA F+AALKT L
Sbjct: 328 LAHRVLVKNAGRMHVLLQNCLRITVSSDKENAMFLAALKTAL 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 650,859
Number of extensions: 25162
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 4
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)