BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0033.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [H...   337   1e-93
gi|300312988|ref|YP_003777080.1| phosphoserine aminotransferase ...   203   2e-53

>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  337 bits (863), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 156/171 (91%), Positives = 161/171 (94%)

Query: 9   SSPSSARRRRPXGGRGKQAMATKDDDWIDQLFIANTHDYILCFSNRGRLYWLKVWEVPQG 68
           S P S  R +  GGRGKQAMATKDDDWIDQLFIANTHDYILCFSNRGRLYWLKVWEVPQG
Sbjct: 562 SQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFSNRGRLYWLKVWEVPQG 621

Query: 69  SRNSRGKPIVNMFPLQDGEKITVVLPLSGENRVFPEDRYVFMSTSLGTVKKTPLSDFSNP 128
           SRNSRGKPIVNMFPLQDGEKITV+LP+SG NR FP+DRYVFM+TSLGTVKKTPLSDFSNP
Sbjct: 622 SRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRYVFMATSLGTVKKTPLSDFSNP 681

Query: 129 RKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDSGKAVRFDENDVRPMGRT 179
           RKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSD GKAVRFDENDVRPMGRT
Sbjct: 682 RKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRFDENDVRPMGRT 732


>gi|300312988|ref|YP_003777080.1| phosphoserine aminotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  203 bits (516), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/123 (81%), Positives = 105/123 (85%), Gaps = 4/123 (3%)

Query: 182 FSAGPAVLPKEVLQQAADEMLDWHGSGMSVMEMSHRGKEYMSIIEAALRDMRELFAVPTN 241
           FSAGPAVLPKEVLQQAADEMLDWHGSGMSVMEMSHRGKEYMSIIEAAL D+R L  +P+N
Sbjct: 5   FSAGPAVLPKEVLQQAADEMLDWHGSGMSVMEMSHRGKEYMSIIEAALADVRALMNIPSN 64

Query: 242 YKILFLQGGAIAENAIIPMNLAGLRGKG----AGVADYINTGSWSTKSIKEARRYCEVXL 297
           YK+LFLQGGAIAENAIIPMNLA LR        GVADYINTGSWSTKSIKEA RYC V +
Sbjct: 65  YKVLFLQGGAIAENAIIPMNLAALRSPAGKHEVGVADYINTGSWSTKSIKEAGRYCTVNV 124

Query: 298 TRS 300
             S
Sbjct: 125 AAS 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 950,642
Number of extensions: 40728
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)