BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0031.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...   301   5e-83
gi|300310091|ref|YP_003774183.1| outer membrane protein and rela...    86   3e-18
gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    84   8e-18
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    84   1e-17

>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  301 bits (770), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 177/199 (88%), Positives = 182/199 (91%), Gaps = 2/199 (1%)

Query: 1   MNKLAKLVFAAASAAIALSATAQEIKDIKVRPNSLYLQDGRDVVTRSGFGLCWQTAFVNG 60
           MNKLAKLVFAAASAAIALSATAQE KDIKVRPNSLYLQDGRDVVTRSG+GLCWQTA+VNG
Sbjct: 1   MNKLAKLVFAAASAAIALSATAQETKDIKVRPNSLYLQDGRDVVTRSGYGLCWQTAYVNG 60

Query: 61  PCEEAPAQAAAPAAAPAAPAAAAAAAPTSEKVTYAADAFFDFDKAVLKPAGKSKLDELVA 120
           P       A AP AA A  A AAAAAPTSEKVTYAADAFFDFDKA LKPAGK+KLDELV 
Sbjct: 61  P--CEEPPAPAPVAAAAPAAPAAAAAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELVG 118

Query: 121 NLKGLNLEVIIAVGHTDSVGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQP 180
           NLK +NLEVIIAVGHTDS+GSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQP
Sbjct: 119 NLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQP 178

Query: 181 VADNKTAAGRAKNRRVEIE 199
           VADNKTAAGRAKNRRVEIE
Sbjct: 179 VADNKTAAGRAKNRRVEIE 197


>gi|300310091|ref|YP_003774183.1| outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Herbaspirillum
           seropedicae SmR1]
          Length = 271

 Score = 85.5 bits (210), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 6/102 (5%)

Query: 100 FDFDKAVLKPAGKSKLDELVAN---LKGLNLEVIIAVGHTDSVGSVAYNQKLSVRRAESV 156
           F+  +A L P GK  LDE+ A    LKG ++E+I   G+TD+ G  A N  LS+ RA++V
Sbjct: 169 FESGQATLTPEGKRILDEIAATMLKLKGRHVEII---GNTDNEGLRASNISLSLARADAV 225

Query: 157 KAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEI 198
           KAYL +KGV+ + + T G+G  +PVA N TA GRAKNRR+E 
Sbjct: 226 KAYLGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEF 267


>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 84.3 bits (207), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 62/108 (57%)

Query: 91  KVTYAADAFFDFDKAVLKPAGKSKLDELVANLKGLNLEVIIAVGHTDSVGSVAYNQKLSV 150
           K+   +D  FD  +A +KP  +  LD   A L       +  VGHTD+ GS A N  LS+
Sbjct: 103 KLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSL 162

Query: 151 RRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEI 198
           +RA   + YL S+GV ANR   +G+G  +P+  N + A RA+NRRVEI
Sbjct: 163 QRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEI 210


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 83.6 bits (205), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 6/102 (5%)

Query: 100 FDFDKAVLKPAGKSKLDELVAN---LKGLNLEVIIAVGHTDSVGSVAYNQKLSVRRAESV 156
           F+  +A L P GK  LDE+ A    LKG  +E+I   G+TD+ G  A N  LS+ RA++V
Sbjct: 165 FESGRATLTPEGKRILDEIAATMLQLKGRRVEII---GNTDNEGLRASNISLSLARADAV 221

Query: 157 KAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEI 198
           KAYL +KGV+ + + T G+G  +PVA N T+ GRA+NRR+E 
Sbjct: 222 KAYLSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIEF 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 549,078
Number of extensions: 17493
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 5
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)