BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0028.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...   233   4e-63
gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...    64   5e-12

>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  233 bits (595), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 132/155 (85%)

Query: 1   VKPDDAGYEDLRVRFLNNYEAKLVVKSKLFDGIPDLLKQLEARGLAWGIVTNKASRFTDP 60
           ++P +  YE+LRVRFL+ Y+A +   S+LFDGIP+LL QLEARG+AWGIVTNKA+RFTD 
Sbjct: 63  IRPGEDEYEELRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFTDV 122

Query: 61  LVPQIGLGHAGCVVSGDTTPHTKPHPAPLYEAASRLQLAAHECWYVGDDLRDIQAGRAAG 120
           L PQIGLGHAGC+VSGDTTPH+KPHPAPL EAA RLQL   +CWYVGDDLRDIQAG+AA 
Sbjct: 123 LAPQIGLGHAGCIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKAAA 182

Query: 121 MQTIAAAWGYCGHVAPASWEADALLHDPLQLLDLI 155
           M TIAAAWGYCGH  PA WEADALLH PLQ+L L+
Sbjct: 183 MPTIAAAWGYCGHTEPAGWEADALLHAPLQILTLL 217


>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 63.9 bits (154), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 27  SKLFDGIPDLLKQLEARGLAWGIVTNKASRFTDPLVPQIGL-GHAGCVVSGDTTPHTKPH 85
           S L+ G+ + L+ L  +GL    VTNK   F  PL+ + GL      V  GD+ P  KP 
Sbjct: 94  SSLYPGVLEGLQALRNKGLRLACVTNKPLAFAVPLLQKKGLRDFFEIVYGGDSFPKKKPD 153

Query: 86  PAPLYEAASRLQLAAHECWYVGDDLRDIQAGRAAGMQTIAAAWGY 130
           P PL +      LA  +   +GD   D QA RAAG + +   +GY
Sbjct: 154 PMPLLQVCQDFALAPAQVVAIGDSSNDAQAARAAGCRVLNVPYGY 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 515,851
Number of extensions: 20788
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)