BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0027.p (1204 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699... 820 0.0 >gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699 [Herbaspirillum seropedicae SmR1] Length = 1124 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/662 (62%), Positives = 507/662 (76%), Gaps = 15/662 (2%) Query: 552 AAVSEPAKKQSTNTAATAAWQARLRNLSISNSNISYEDSGVTP----TQKLRVEGLDLKV 607 A VS A K S N+ T W R +L + +S + +TP TQ + VE L L+V Sbjct: 468 APVSGLAGKLSGNS--TLQW--RDGHLKLDDSTVELASLQLTPEGKSTQPISVESLKLRV 523 Query: 608 DNLSSQLDQSSKLSLHATLNKNGKLSVTGQATPQLKSVDLALDALNLPIAPFQTYFTDYL 667 N++ DQ+ L+L A L+KNG +TGQ P LK+ DL LD LPIAP Q YFTD L Sbjct: 524 QNVTDTFDQAMPLTLQARLDKNGSADITGQIAPHLKNADLDLDLRELPIAPVQGYFTDIL 583 Query: 668 NVTLTSGTLSTKGKLALTPPINKQTLALQYNGSASLNNFRVLDKLTSSDFLRWRTLNLQG 727 NV++++G LS KGKLALT P+ +Q AL Y G+A++ N R+ DKLTS+DFLRWRTL L G Sbjct: 584 NVSISNGALSAKGKLALTLPLQQQKFALDYKGNAAIANLRMQDKLTSTDFLRWRTLTLAG 643 Query: 728 INARIGGKPXIAL-----SDFYARAILSDQGKLNLQDIVVSKEAPRSSVTAPEASADKPS 782 INA++GG+ IAL + FYARAILS++G+LNLQDI+V+ P+ S+T DK + Sbjct: 644 INAKLGGRAQIALDKVTLNSFYARAILSEKGRLNLQDILVADGQPQGSITDDSKKDDKEN 703 Query: 783 TT-VAKTTTSTAPVTPAAPDPNAPVIRIGQTVLQSGNINFTDNFVKPNYTVNMTGMGGTI 841 ++ + S+ PVT A +AP++R+GQ VL+ GNIN+TDNFVKPNYT NMTG+ G+I Sbjct: 704 RRDSSRKSVSSTPVTSPAARADAPIVRVGQVVLEGGNINYTDNFVKPNYTANMTGLAGSI 763 Query: 842 GSIASDKPQPATIDLRGKVDNDAPLQISGALNPLFKPMFLDVKASANGVQLPRLTPYSAK 901 G I+S+KPQPA +++ GK+DNDAPLQISGALNPLFKPM+LD+KASANGVQLPRLTPYSAK Sbjct: 764 GEISSEKPQPAPVNISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAK 823 Query: 902 YAGYPITKGKLSMDVQYKIENDKLVAQNDVRIEQLTFGDHVDGPNVTKLPVMLAVSLLKD 961 YAGYPITKGKLSMDVQYKIENDKLVAQND+RIEQLTFG+ VD PN T LPVMLAVSLLKD Sbjct: 824 YAGYPITKGKLSMDVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKD 883 Query: 962 RDGTINLNLPISGSLSDPQFSIGGIIMRVFVNLIVKAVTSPFALISSMFGSGGGDAELSY 1021 R+G INLNLPISGSLSDP+FS+GGII+RVFVNLI KAVTSPFALI SMF S EL Y Sbjct: 884 RNGNINLNLPISGSLSDPEFSVGGIIVRVFVNLIAKAVTSPFALIGSMFRSDENIGELRY 943 Query: 1022 IEFEPGSSEITADIRKKLDTLGYALHQRPALKIDVMGRADPTVDDAGLRKEVLNRKMRAL 1081 IEF GS+EI A++RKKLD LGY LH+RP +K+D+MGR DP VDD GLRKE L R+MR Sbjct: 944 IEFPAGSAEIDAEVRKKLDALGYVLHERPGIKLDIMGRVDPQVDDQGLRKEALERQMRGY 1003 Query: 1082 KRKDVIEKEGQPTGKDNELSEADRAKYMEKVYKEEKFKKPRNMVGLAKSLPPEEMQQLIV 1141 KR ++I +EGQP+G L++ +R+KY+E+ YKE KF KPRNM+GLA+SLPP EM++LI+ Sbjct: 1004 KRAELIAREGQPSGP-VRLTDVERSKYLERAYKEAKFDKPRNMIGLARSLPPAEMEKLIL 1062 Query: 1142 DNTPVTEDDLRNLAQRRADVVRNYLQDQSIISADRIFLIAPKLTAEGIKDKGQGSRVDLS 1201 ++T V+ DDLR+LAQRRAD VRNYLQ+QS+I RIFLIAPKL GI DK +RVDL+ Sbjct: 1063 EHTQVSPDDLRSLAQRRADQVRNYLQEQSVIEPARIFLIAPKLDGAGIPDKEPKARVDLT 1122 Query: 1202 LQ 1203 +Q Sbjct: 1123 IQ 1124 Score = 463 bits (1191), Expect = e-131, Method: Compositional matrix adjust. Identities = 237/480 (49%), Positives = 329/480 (68%), Gaps = 19/480 (3%) Query: 13 LHCRRLSXKIGRKLDIGELSFNPFLLALRVHDVTLYEPDQKTAAFSARELVVNASSTSAL 72 L + ++GRKLD+G +SFNPF LAL+V D+TLYE D KT + + L+V+ASS S L Sbjct: 50 LAVEQTQAQLGRKLDVGAVSFNPFRLALQVSDITLYEADGKTPFLAVQSLLVDASSASLL 109 Query: 73 RLAAILDEIKLVEPKVHVVRLSDEGIGRYNFSDIIDRVLAMPKSEGQTLFSLANVQLQNG 132 LA +LDE++L +P++ V R+ + G YNFSDI++R+ A PKSEGQ FSLANVQLQ+G Sbjct: 110 CLAPVLDEVRLSKPQLRVQRIDADQGGHYNFSDILERLAAQPKSEGQARFSLANVQLQDG 169 Query: 133 AILFDDKVSGKTIDIRALNIGVPFVSNLPRNVDTFVQPVLSMTVNGTPFSLKGRSKPFAS 192 AI F+DK++GKTIDI AL +G+PF+SNLP N+D+FVQP LS T+NGTP LKGRSKPF+S Sbjct: 170 AIHFEDKLTGKTIDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFSS 229 Query: 193 SLDTTLAIDIDKLDVASYLPFSPVPLPVKLESAKLSTQLDLTFSRDKDKPQIGLDGDFTL 252 +L++ AIDI++LD+ SYLPF P+ LPV L+S LST+LDL F+R +DKP I L GD L Sbjct: 230 TLESAFAIDIERLDLVSYLPFVPMELPVLLQSGHLSTRLDLGFNRQQDKPTITLAGDVVL 289 Query: 253 TDISVQENNAAPLIKIGSVSAKINKLDLLKLSGVIDEIAIDKPQVWADMNARGEINWTRI 312 DI+V + APL+K ++ K+ + D+L SG I ++ +++PQ+WA MN RGEINW R Sbjct: 290 DDIAVADRAKAPLLKARQLAVKLGQFDVLAASGQISQVTLEQPQIWASMNGRGEINWVR- 348 Query: 313 GKKDVRAKSPASAAPAASARKPATTTPATETKAEAKDAAAPAITIRKLLVRDGSVQWTDD 372 A AAPA R A+ + + AI +++L VRDG V W D+ Sbjct: 349 ----------ALAAPATGKRTAASQAATSAQAS--------AIVLQQLNVRDGRVNWRDE 390 Query: 373 ANASLRQTVHLGKITVDAEEVSTTADAKPARLALSLTENDKGEIGFTGALAPLKGEINGT 432 ANAS Q V L I +DA ++ST A+A+PA L ++ EN G +GF G +APLK + G Sbjct: 391 ANASPAQNVQLSGIEIDAAQLSTAANAQPATLKVTAIENGHGRLGFEGQVAPLKPAVAGK 450 Query: 433 ASLKAIQLSGYQNYLNRSLNGALSGQVSGSTEVQIANGQIKLGKLGVEIADLKLSPKTKS 492 +L I L+GY+NYL+R+ L+G++SG++ +Q +G +KL VE+A L+L+P+ KS Sbjct: 451 LTLAGIDLAGYRNYLHRAPVSGLAGKLSGNSTLQWRDGHLKLDDSTVELASLQLTPEGKS 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,352,267 Number of extensions: 135661 Number of successful extensions: 356 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 348 Number of HSP's successfully gapped: 2 Length of query: 1204 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1108 Effective length of database: 1,165,310 Effective search space: 1291163480 Effective search space used: 1291163480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 136 (57.0 bits)