BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0020.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310555|ref|YP_003774647.1| serine hydroxymethyltransferase...   462   e-131

>gi|300310555|ref|YP_003774647.1| serine hydroxymethyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  462 bits (1188), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/234 (92%), Positives = 226/234 (96%)

Query: 1   MFAKNHTIANVDPELWSVIQKENVRQQEHIELIASENYTSPAVMEAQGTQLTNKYAEGYP 60
           MF KN T+A VDP+LWS IQKEN RQQ+HIELIASENYTSPAVMEAQG+QLTNKYAEGYP
Sbjct: 1   MFDKNQTLAKVDPDLWSAIQKENARQQDHIELIASENYTSPAVMEAQGSQLTNKYAEGYP 60

Query: 61  GKRYYGGCEFVDMAEQLAIDRLKKLFGAEAANVQPNSGSQANQGVFFAMLKPGDTIMGMS 120
           GKRYYGGCE+VD+AEQLAIDRLK LFGAEAANVQPNSGSQANQGVFFAMLKPGDTIMGMS
Sbjct: 61  GKRYYGGCEYVDVAEQLAIDRLKALFGAEAANVQPNSGSQANQGVFFAMLKPGDTIMGMS 120

Query: 121 LAEGGHLTHGMALNMSGKWFNVISYGLNDKEEIDYEAMEAMAREKKPKLIIAGASAYALR 180
           LAEGGHLTHGMALNMSGKWFNV+SYGLNDKEEIDYEAME +AREKKPKLIIAGASAY+LR
Sbjct: 121 LAEGGHLTHGMALNMSGKWFNVVSYGLNDKEEIDYEAMERLAREKKPKLIIAGASAYSLR 180

Query: 181 IDFERFAKIAKEVGAYFMVDMAHYAGLIAAGVYPNPVPHADFVTSTTHKSLRGP 234
           IDFERFAKIAKEVGAYFMVDMAHYAGLIAAGVYPNPVP ADFVTSTTHKSLRGP
Sbjct: 181 IDFERFAKIAKEVGAYFMVDMAHYAGLIAAGVYPNPVPFADFVTSTTHKSLRGP 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,095,839
Number of extensions: 43787
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)