BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0015.p
         (132 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310550|ref|YP_003774642.1| TolA-related transport transmem...    97   3e-22

>gi|300310550|ref|YP_003774642.1| TolA-related transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 97.4 bits (241), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 71/102 (69%), Gaps = 3/102 (2%)

Query: 2   STPYQVPRQPGRWRAIALAVVVHMALLAFLWFGISWQSETPLTVEAEIWDPNIKEAA--- 58
           + PY +P+ PGRWRAI LA+V+H+AL  F W GI WQSETPLTVEAEIWDP  KEAA   
Sbjct: 4   NAPYNIPKAPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAAPLP 63

Query: 59  PLPQPAPEPEPPKPTPTPVPEPVKPPPPKVEEPPVAKPDIAL 100
             P+P P+P    P P P PEP   PP  ++EP V KPDIAL
Sbjct: 64  TPPEPQPQPVVEPPKPQPQPEPKPVPPKVIDEPKVEKPDIAL 105


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.131    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 163,368
Number of extensions: 3145
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 57
Effective length of database: 1,264,745
Effective search space: 72090465
Effective search space used: 72090465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)