BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0009.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310548|ref|YP_003774640.1| Tol-Pal cell envelope complex s...   175   9e-46

>gi|300310548|ref|YP_003774640.1| Tol-Pal cell envelope complex
           subunit YbgF protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  175 bits (443), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 92/103 (89%)

Query: 14  AGAAFSDFLKRYPQSGYAPSAQYWVGNSLYAQRDYKGAIAAQQVVTKNYPDSPKVADAML 73
           A  AF+DFLKRYPQSGYAPSAQYW GNSLYAQRDYKGAIAAQQVV KNYPD+PK ADA+L
Sbjct: 149 AANAFADFLKRYPQSGYAPSAQYWQGNSLYAQRDYKGAIAAQQVVVKNYPDNPKAADALL 208

Query: 74  NIGSSYVELKDKAAAKKTWDALIAKYPESPAAQTGKEKLATLK 116
           NI SS  ELKDKAAAKKT + LIAKYP +PAAQTGKE++A+LK
Sbjct: 209 NIASSQAELKDKAAAKKTLEQLIAKYPNTPAAQTGKERMASLK 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.124    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 299,003
Number of extensions: 9547
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 124 (52.4 bits)