BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0006.p
         (421 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase [Herb...    63   4e-11

>gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 17/244 (6%)

Query: 2   LTPAQIEQYRTDGLLVVPGLLDVFTLQRMKEALAQWLEQSRAVDAHTQVFDLENGHSAEE 61
           L+  Q+  +R  G L++ G++     +RM       L+++ A   +      E   ++ E
Sbjct: 5   LSSTQVAFFREQGYLLLKGMVPADLRERMLAVTRDHLQRAVAPLEYEAEVGYEGAPASLE 64

Query: 62  PR----LRRIKQPHKHHPVFEEFIRSQPMVAVLRDLLGQGLRLQSSKLNL---KSPRFGS 114
                  RR++   +  PV+ E+  S+ +VA+L  L  + + +  +  N    K P FG+
Sbjct: 65  AEGGRTARRLRAAWQRDPVYREWAGSRALVAILHQLFDEPVCITLAHHNCVMTKHPAFGT 124

Query: 115 PVEWHQDWAFYPHTNDDILAVGVMLDDTSLENGAMLVVPGSHTGPTYDHHADGRFCGAID 174
              WH+D  ++    +++++V + L   + ENGA+  +PGSH         D      +D
Sbjct: 125 ATGWHRDIRYWSFPRNELISVWLALGAETPENGALKFIPGSHKLKLQPEQMD-----ELD 179

Query: 175 PATPGLNLDRAVPVTGKA-----GAVSFHHVRAVHGSAQNRSTMSRNFLLYEVCAADAFP 229
              P +  ++A+   G A     G V   H    H + +N S   +   ++    A   P
Sbjct: 180 FLRPDVAANQALFAQGIALSLEPGDVVLFHSGLFHAAGRNDSDQVKCSAVFAYHGASNPP 239

Query: 230 LLGV 233
           L G 
Sbjct: 240 LAGT 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,312,785
Number of extensions: 53433
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,203,190
Effective search space: 400662270
Effective search space used: 400662270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)