BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0004.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309450|ref|YP_003773542.1| hemin transport protein [Herbas...   134   1e-32

>gi|300309450|ref|YP_003773542.1| hemin transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 14/310 (4%)

Query: 26  HATRLDSE---FAPLMQRLAALGNLTEVTRNSSALLEKDNVSGALYVDNEIELAPAEAM- 81
            ATRL S+      L +RLA LG +  V RN   +LE+         D +  + P   + 
Sbjct: 69  QATRLTSDARDLQALYERLAELGRIKAVIRNDDVMLERTGAVTPARRDEQGRVVPGTGLA 128

Query: 82  ----HLRIFYPQWEHGYALEEHDACSGGKRHSLQFFDRYGNMMHKIMLGEDGDIASFRQL 137
                LRI   QW   +A+ +     G    SLQFFD++G  +HKI L  D  IA++ +L
Sbjct: 129 GGPIDLRIGGVQWGSAFAVAQ-PGRDGKALRSLQFFDQHGQAIHKIYLDNDEHIAAYERL 187

Query: 138 VSDHAAAEQLAPHLVHPLDSATGTGDDSLGRI---DVDALRAEWAHTHNHEDFIQRQEAF 194
           V++   A Q AP +  P  + T    D  G     DV  LR  W    +   F +     
Sbjct: 188 VAEFRIAGQPAPLIALP--APTQPPADVRGTASAADVAQLRQAWTKLTDVHQFPRLLREL 245

Query: 195 DRQRLRKLRLAGKAFAYQVANDSARVILQRMTEFGTSIMAQVGNAGIVQAYYGKIKNIRV 254
              R + L+L G   A++++    ++++         IMA V   G+ Q Y G I     
Sbjct: 246 KLSREQALQLIGDDSAWRISAQGLQLLMDDARARRQPIMAFVSQGGMTQIYSGMIDRSSN 305

Query: 255 KDSRLKIMNAGFRMQLREDHIDSVWVAKKPTTDGIITSLELFNRQGTHIASFLSKKSNGQ 314
             +  +++   FR+++R   ID  WV ++PT  G++TS+E ++  G  + +F S++  GQ
Sbjct: 306 SGAWYEVLGEDFRLKVRSATIDHGWVVRRPTDHGMVTSVEFYDAAGRQLVNFFSRRDRGQ 365

Query: 315 PEPREWREAI 324
           PE  +WR  +
Sbjct: 366 PETAQWRRMV 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,077,057
Number of extensions: 44991
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)