BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0231.0001.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310294|ref|YP_003774386.1| membrane protein [Herbaspirillu...   149   2e-37
gi|300310293|ref|YP_003774385.1| NAD-dependent aldehyde dehydrog...    94   1e-20
gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde dehydrog...    62   5e-11
gi|300313241|ref|YP_003777333.1| NAD-dependent aldehyde dehydrog...    60   2e-10

>gi|300310294|ref|YP_003774386.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 444

 Score =  149 bits (375), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/79 (91%), Positives = 76/79 (96%)

Query: 35  KREAIGATFSVGREPSLAIIGERYGMNSPEGRGVLAEYITGTLFGAVFIAIFAGFITSLN 94
           KREAIGATFSVGREPSLAIIGERYGM+SPEGRGVLAEY+TGTLFGAVFIAI AGF+ SLN
Sbjct: 144 KREAIGATFSVGREPSLAIIGERYGMDSPEGRGVLAEYLTGTLFGAVFIAILAGFLASLN 203

Query: 95  IFHPVALAMGAGVGSGSMM 113
           +FHP ALAMGAGVGSGSMM
Sbjct: 204 LFHPYALAMGAGVGSGSMM 222


>gi|300310293|ref|YP_003774385.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 504

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 68/98 (69%)

Query: 111 SMMAAAAGAGPGMTAGPTVTLAGQGHTVGQAAIDHRVVKKVVFVGSPQTGKKIAEAAARR 170
           S+  A  G   G+ AG    LAG G T+   A+    VKKV+FVGSP TG  IA+AAA R
Sbjct: 199 SLAIARLGEQAGLPAGLVNVLAGLGQTMVPQAMATWTVKKVIFVGSPATGALIAKAAAAR 258

Query: 171 LLPCVLELGGKSANIVFADADLKRACLGAQAAIFSSAG 208
           ++PCVLELGGKSANI+F DADL+ A  GAQAAIFS AG
Sbjct: 259 VMPCVLELGGKSANIIFEDADLRLAAFGAQAAIFSGAG 296


>gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score = 61.6 bits (148), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 42/87 (48%)

Query: 122 GMTAGPTVTLAGQGHTVGQAAIDHRVVKKVVFVGSPQTGKKIAEAAARRLLPCVLELGGK 181
           G   G    + G GH  G   + H  V  + F GSP  GK +  AAA    P  LELGGK
Sbjct: 191 GFPEGALNIVTGYGHEAGDLLVKHPDVNHISFTGSPNVGKLVVRAAAEHHTPVTLELGGK 250

Query: 182 SANIVFADADLKRACLGAQAAIFSSAG 208
           S  IVF DAD++        AI  +AG
Sbjct: 251 SPQIVFEDADMEAMLPVVVNAIVQNAG 277


>gi|300313241|ref|YP_003777333.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%)

Query: 131 LAGQGHTVGQAAIDHRVVKKVVFVGSPQTGKKIAEAAARRLLPCVLELGGKSANIVFADA 190
           + G G++VG+A  +H  V K+ F GSP+ G+ I   A  +     LELGGKS  IVF DA
Sbjct: 209 VTGYGNSVGRALCEHPDVAKISFTGSPEAGRAIQRIAGEQFKRVTLELGGKSPQIVFDDA 268

Query: 191 DLKRACLGAQAAIFSSAG 208
             + A  G    +F + G
Sbjct: 269 PFEDALFGCTLGLFVNQG 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 606,148
Number of extensions: 22630
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 8
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)