BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0230.0009.p (139 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC t... 63 9e-12 gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC t... 63 9e-12 gi|300312237|ref|YP_003776329.1| amino acid ABC transporter perm... 57 5e-10 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 54 6e-09 >gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 62.8 bits (151), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 71/120 (59%), Gaps = 13/120 (10%) Query: 4 DILVQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFG-MYSSFWLFALYALD 62 DI +Q + +GL++G +YAL+A+G T+++GV++++NFAHG+ LM G M L + + Sbjct: 2 DIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVA 61 Query: 63 PIFTLP-LTALFLFGLGA---------LLYKLVIRKITNAPMVSQIFTTFGLMILFRGIA 112 P LP + L + +GA L+ ++ R + NAP ++ + T G+ IL + +A Sbjct: 62 P--GLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTLA 119 >gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 62.8 bits (151), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 71/120 (59%), Gaps = 13/120 (10%) Query: 4 DILVQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFG-MYSSFWLFALYALD 62 DI +Q + +GL++G +YAL+A+G T+++GV++++NFAHG+ LM G M L + + Sbjct: 2 DIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVA 61 Query: 63 PIFTLP-LTALFLFGLGA---------LLYKLVIRKITNAPMVSQIFTTFGLMILFRGIA 112 P LP + L + +GA L+ ++ R + NAP ++ + T G+ IL + +A Sbjct: 62 P--GLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTLA 119 >gi|300312237|ref|YP_003776329.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 57.0 bits (136), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 4/112 (3%) Query: 5 ILVQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDPI 64 +L Q L + L +G +YAL A+G TL+FGV+ ++N +HG M G Y++ L AL P+ Sbjct: 1 MLEQQLINALSLGSVYALFALGFTLVFGVLGVINLSHGAIFMLGSYAALLLVEQMAL-PL 59 Query: 65 FTLPLTALFLFG-LGALLYKLVIR--KITNAPMVSQIFTTFGLMILFRGIAQ 113 + L A+ G LG ++ LV++ + NAP + + T G+ I+ I+Q Sbjct: 60 WVALLLAMVATGLLGLIIDVLVLKPLRKRNAPHLIPMIATIGVAIMITNISQ 111 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 53.5 bits (127), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%) Query: 6 LVQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLM------------FGMYSSF 53 L Q L +GL +G IYAL+AIG T+++G++ ++NFAHGE M G+ S + Sbjct: 8 LTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQSGY 67 Query: 54 WLFALYALDPIFTLPLTALFLFGLGALLYKLVIRKITNAPMVSQIFTTFGLMILFRGIAQ 113 L L I ++ +T L+ G + ++ R + P + + + G+ I + Q Sbjct: 68 PLPLLLGGALIVSVLVTGLY----GWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYVQ 123 Query: 114 XKSAPTSSSSPSWWS 128 S P S Sbjct: 124 IGQGARDMSVPVLIS 138 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 281,382 Number of extensions: 8553 Number of successful extensions: 86 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 12 Length of query: 139 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 63 Effective length of database: 1,260,010 Effective search space: 79380630 Effective search space used: 79380630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 126 (53.1 bits)