BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0230.0007.p (292 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t... 65 8e-12 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 65 8e-12 gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC t... 64 2e-11 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 64 2e-11 gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t... 63 2e-11 >gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC transporter ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 596 Score = 64.7 bits (156), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 57/103 (55%) Query: 32 LALALPLYVTSPSHQNLAILILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAILF 91 + LALP P L + + A + + ++ G AG +S G AF G+GAYT+A L Sbjct: 18 IVLALPQLGLPPFWVTLLSYVGLYAIVALGLVLLTGVAGLISFGQAAFVGMGAYTTAYLT 77 Query: 92 SVYGVNPWFAMIVGGVIAALVSLVIGWSCFRLKGHYFAMATIA 134 + +G++PW ++ G + A + +IG R+ GHY ++TIA Sbjct: 78 TQFGLSPWIGLLAGIALTACSAFLIGSLTMRISGHYLPLSTIA 120 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 64.7 bits (156), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 19/139 (13%) Query: 52 ILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAILFSVYGV-NPWFAMIVGGVIAA 110 IL+ A + S N + GY G VS GH F+G+GAY +AI S +GV + W ++ ++ A Sbjct: 35 ILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIA-SFHGVTSAWLIWLLAALVTA 93 Query: 111 LVSLVIGWSCFRLKGHYFAMATIAVAEXNCRPIAIVAISSFEGEIHDLGYFGADPGVRPV 170 LV LVIG R + YF M T+A+A+ F Y+G D G++ Sbjct: 94 LVGLVIGVIALRTRAVYFIMITMALAQL------------FYYFFVGFRYYGGDDGLQVT 141 Query: 171 DRTYLCARGNRFDADLRRD 189 R L F D+ D Sbjct: 142 ARPLLG-----FGLDMSGD 155 >gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 408 Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 1/112 (0%) Query: 26 LIALLVLALALPLYVTSPSHQNLAILILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAY 85 ++ LL+ AL P + S + ++ L L+ +G+ NIV G+AG + LG+V FY +GAY Sbjct: 84 VMILLMAALVWPFF-GSRGYVDVMTLALIYVVLGLGLNIVVGFAGLLDLGYVGFYAVGAY 142 Query: 86 TSAILFSVYGVNPWFAMIVGGVIAALVSLVIGWSCFRLKGHYFAMATIAVAE 137 T A+ +G+ W + + +AL ++G+ RL+G Y A+ T+ E Sbjct: 143 TYALCNQYFGLTFWECVPLAAAASALFGFLLGFPVLRLRGDYLAIVTLGFGE 194 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 19 FNKTHGLLIALLVLALA-LPLYVTSPSHQNLAILILMAAQIGVSWNIVGGYAGQVSLGHV 77 NK LL L ++ALA +P+ V +P + +L IL+ A + +IV GY GQVSLGH Sbjct: 1 MNKKILLLSLLGIVALAGIPMVVHNPYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHA 60 Query: 78 AFYGIGAYTSAILFSVYGVNPWFAMIVGGV-IAALVSLVIGWSCFRLKGHYFAMATIA 134 +GIG+Y + +LF G+ P F + + + A+ ++ R+ G Y AM T+A Sbjct: 61 GLFGIGSYAAGVLFFKLGM-PIFVTVPAAIAVTAVFGAILALPALRVTGPYLAMVTLA 117 >gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 597 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 47/79 (59%) Query: 56 AQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAILFSVYGVNPWFAMIVGGVIAALVSLV 115 A + + ++ G G S G AF G+GAYT++ L +V+GV+PW + VG I + + V Sbjct: 39 ALVAIGLVLLTGIGGMTSFGQAAFVGMGAYTTSYLTTVHGVSPWLTLPVGLFITGVSAYV 98 Query: 116 IGWSCFRLKGHYFAMATIA 134 +G R+ GHY +ATIA Sbjct: 99 LGRITLRMSGHYLPLATIA 117 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.141 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 893,986 Number of extensions: 34133 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 13 Length of query: 292 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 208 Effective length of database: 1,222,130 Effective search space: 254203040 Effective search space used: 254203040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)