BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0230.0005.p (232 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 219 2e-58 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 219 2e-58 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 215 3e-57 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 212 2e-56 gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 203 1e-53 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 219 bits (557), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 161/233 (69%), Gaps = 4/233 (1%) Query: 1 VRNLRASYDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGL---NKVDAGSIVF 57 V+ L +Y G+ A+ +D++V G LV L+G NG GK+TTL+AI G ++V+ G I + Sbjct: 8 VQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVE-GHIEY 66 Query: 58 DNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYTRSDKHEIAESIEEMYTT 117 + F+ V L++VPEGR +F R+S+Q NL +GAYT DK +IA I++ + Sbjct: 67 LGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWFAV 126 Query: 118 FPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTIQQV 177 FP +KER Q+AGT+SGGEQQMLA+AR LM+ P+LLLLDEPS G++P V K+ + I+ V Sbjct: 127 FPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRNV 186 Query: 178 NAKGVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 230 +A+G++ILLVEQN AL AH GYV+++G I M+G ++L++ +K AYLG Sbjct: 187 SAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 219 bits (557), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 161/233 (69%), Gaps = 4/233 (1%) Query: 1 VRNLRASYDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGL---NKVDAGSIVF 57 V+ L +Y G+ A+ +D++V G LV L+G NG GK+TTL+AI G ++V+ G I + Sbjct: 8 VQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVE-GHIEY 66 Query: 58 DNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYTRSDKHEIAESIEEMYTT 117 + F+ V L++VPEGR +F R+S+Q NL +GAYT DK +IA I++ + Sbjct: 67 LGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWFAV 126 Query: 118 FPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTIQQV 177 FP +KER Q+AGT+SGGEQQMLA+AR LM+ P+LLLLDEPS G++P V K+ + I+ V Sbjct: 127 FPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRNV 186 Query: 178 NAKGVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 230 +A+G++ILLVEQN AL AH GYV+++G I M+G ++L++ +K AYLG Sbjct: 187 SAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 215 bits (547), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 155/231 (67%) Query: 1 VRNLRASYDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGLNKVDAGSIVFDNT 60 V +L +Y + A+ + + + G + ALVG NG GKST+L AI+GL K G ++ Sbjct: 13 VEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQ 72 Query: 61 DIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYTRSDKHEIAESIEEMYTTFPI 120 D+ ++ P V G+ V EGR L+V+ NL LGAYTR DK +A +E +Y+ FP+ Sbjct: 73 DLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSLFPV 132 Query: 121 IKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTIQQVNAK 180 +K R LAG +SGGEQQMLAI R LMAKP++LLLDEPS G+AP + ++ +Q++N Sbjct: 133 LKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKT 192 Query: 181 GVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLGG 231 G+++LLVEQN+ +AL IA GYV++TG+IV+E +G+ LL N + +AYLGG Sbjct: 193 GMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 212 bits (539), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/223 (46%), Positives = 152/223 (68%), Gaps = 1/223 (0%) Query: 8 YDGVLALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGLNKVDAGSIVFDNTDIGKVPP 67 Y + AL V ++V+ G +V L+G NG GK+T L + G + +G ++F+ DI ++ Sbjct: 12 YGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFEGQDITQLQT 71 Query: 68 FDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYTRSDKHEIAESIEEMYTTFPIIKERRHQ 127 + + GL++ PEGRR+F L+V NL++GA+ S++ I + IE ++ FP +KER Q Sbjct: 72 HEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNE-AIEQGIEYVFGLFPRLKERAAQ 130 Query: 128 LAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDTIQQVNAKGVSILLV 187 AGTMSGGEQQMLAI R LM+KPRLLLLDEP+ G+AP + ++ D I+ + GV++ LV Sbjct: 131 RAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLV 190 Query: 188 EQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 230 EQN +KAL +A GYV++ G +VM TG+ LL N D++KAYLG Sbjct: 191 EQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 203 bits (517), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/238 (46%), Positives = 151/238 (63%), Gaps = 8/238 (3%) Query: 1 VRNLRASYDGV-LALSKVDIDVKPGSLVALVGGNGNGKSTTLRAIAGL-----NKVDAGS 54 + N+ YD V L L V +DV G +VAL+G NG GKSTTL+AI+ L V GS Sbjct: 28 INNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTKGS 87 Query: 55 IVFDNTDIGKVPPFDRVGLGLSLVPEGRRLFGRLSVQRNLELGAYTRS-DKHEIAESIEE 113 I F + ++ P D V G+ V EGR FG L+V+ NL GAYTR E+ +E+ Sbjct: 88 IEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHELEK 147 Query: 114 MYTTFPIIKERRHQLAGTMSGGEQQMLAIARGLMAKPRLLLLDEPSWGIAPKFVTKVLDT 173 +Y FP +K RR +G SGGEQQM AI R +MAKP ++LLDEPS G+AP+ V ++ + Sbjct: 148 IYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIFEI 207 Query: 174 IQQVNAK-GVSILLVEQNLHKALAIAHYGYVIQTGRIVMEGTGSELLNNDDIKKAYLG 230 ++ +N+K VS LL EQN AL A +GY+++ GR+VMEG SEL +N+D+K+ YLG Sbjct: 208 VKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 737,942 Number of extensions: 31629 Number of successful extensions: 473 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 136 Length of query: 232 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,231,600 Effective search space: 184740000 Effective search space used: 184740000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)