BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0076.p
         (485 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310943|ref|YP_003775035.1| site-specific recombinase trans...    67   4e-12

>gi|300310943|ref|YP_003775035.1| site-specific recombinase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 738

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 31/269 (11%)

Query: 28  LYTDIGILSNDGFFSELHRRLAYRVLPPALDDRYLSDCLEKLFPFNTDYLWMRAVPVDDW 87
           L++  G+    GFF EL  RLA  +LP  L    LS     +FP   D +W+  +  D  
Sbjct: 108 LFSTTGLPHEPGFFGELSERLARLILPRHLSPTDLSSLFTAMFPDPDDAVWLLELDNDLL 167

Query: 88  AALFEVLQNADAELPPEADKFDKLDEQKTLTEILLAIQVLSYRISAIGIEPEL-IRIYSD 146
             L++++ +         D    +  Q    +I  AI  L+  + A GI P    R+   
Sbjct: 168 QRLWKLMAD---------DGISHMYWQ----QIEEAITYLTTTVVADGISPAFRQRLEPK 214

Query: 147 VKAFESPFLMQNVELHRYLDGYMHHLNADAISPAPLEDASHVLVMLDQCQEVVTRIRKST 206
           +    +PFL    E+  +L             P  +     V +++  C     RI    
Sbjct: 215 MPMRATPFLALRREMEAWLRA----------QPGDMGALRSVRMLVAVCHAQTDRIYAHL 264

Query: 207 LRLGTSIAVTYRLVRLDQHLDRLRKLLSLVDVGKPENA---AVTAMQ-KRGIG-LELGL- 260
              G S+++ YR+ R+  HL R+ +L+  V  G P  A   AV  M  K G G ++L L 
Sbjct: 265 DEYGVSVSLVYRVERMRAHLQRIGRLID-VRSGMPGPAISPAVPGMAVKPGAGRVQLLLC 323

Query: 261 ELIEAHNRKYTVRDLFAANINLLARNITE 289
           +LI AH+ + +VR L   +  LLAR + E
Sbjct: 324 DLISAHHHRDSVRGLMRRSFALLARKMVE 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,436,850
Number of extensions: 58166
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,198,455
Effective search space: 474588180
Effective search space used: 474588180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)