BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0072.p
         (92 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312007|ref|YP_003776099.1| transmembrane transcription reg...    65   7e-13

>gi|300312007|ref|YP_003776099.1| transmembrane transcription
          regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 65.5 bits (158), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 3/75 (4%)

Query: 1  MNPLPVTEADLQGYVDGLLPQERLADVAAYLERNP---EEAERLRTYRHQNQALHLLFDP 57
          M    + E DL  + DG LP  R +++AA+LE++P   E AE++R +R Q +ALH  FDP
Sbjct: 1  MKTPAIPEEDLHAFADGQLPAARASEIAAWLEQDPTQAEAAEQVRDWRWQKRALHAHFDP 60

Query: 58 VLDEPLPARLSASAL 72
          VL+E LP RL+A+ L
Sbjct: 61 VLEEALPPRLAAAVL 75


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 276,835
Number of extensions: 10325
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 92
Length of database: 1,619,870
Length adjustment: 62
Effective length of query: 30
Effective length of database: 1,326,300
Effective search space: 39789000
Effective search space used: 39789000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)