BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0069.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312011|ref|YP_003776103.1| hypothetical protein Hsero_2699...   383   e-107

>gi|300312011|ref|YP_003776103.1| hypothetical protein Hsero_2699
           [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/252 (77%), Positives = 216/252 (85%), Gaps = 1/252 (0%)

Query: 21  GGGGLVPWATITGYGSRDSYGANVHYTYVGTQDYKLASYGVAVGIADRVELSVARQRFTG 80
           GGGGL PWA ITGYGSRDSYGAN HYTY+ TQDY L SYGVAVGI DR+ELSVA+Q F G
Sbjct: 91  GGGGLTPWALITGYGSRDSYGANAHYTYLATQDYTLRSYGVAVGILDRLELSVAKQEFYG 150

Query: 81  SLAPLNNLRIDQDIYGVKVKLAGDIVYDQDTWMPQLAAGVMVKRNNGIGGLGAALTNVKD 140
             APLN+L+I QDI GVK+KLAGD VYDQD W+PQ+AAGVM KRNNG+GGLG  +T+VK 
Sbjct: 151 GAAPLNDLKITQDIVGVKLKLAGDAVYDQDRWLPQIAAGVMFKRNNGVGGLGP-VTSVKQ 209

Query: 141 LGAKSDSGIDYYLAATKLFLDQSLLLNATVRATKANQMGILGFGGDKNDRYQAMLESSVA 200
           LGA SD+GIDYYL+ATKL L QSLLLN TVR TKANQMG+LGFGGD+ DRYQAM E S A
Sbjct: 210 LGAASDAGIDYYLSATKLLLAQSLLLNGTVRLTKANQMGLLGFGGDRGDRYQAMGEFSAA 269

Query: 201 YLLNRQWVVGAEYRMKPRNLAVDNEKDYYDAFVAWFPSKNLSLTLAYVSLGDITIYNPKR 260
           YL+ R   +G EYRMKPRNLA D EKDYYDAF+AWFPSKNLSLTLAYV+LGDIT+YNPKR
Sbjct: 270 YLIQRDLALGVEYRMKPRNLAADPEKDYYDAFLAWFPSKNLSLTLAYVALGDITVYNPKR 329

Query: 261 QDGVYLSVQAGF 272
           Q GVYLS+QAGF
Sbjct: 330 QRGVYLSLQAGF 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 786,066
Number of extensions: 31560
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)