BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0066.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312013|ref|YP_003776105.1| hypothetical protein Hsero_2701...   241   3e-65

>gi|300312013|ref|YP_003776105.1| hypothetical protein Hsero_2701
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  241 bits (614), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 127/148 (85%), Gaps = 1/148 (0%)

Query: 17  KQAEVEQKDVKFFPLVSVVQVGTPILFPNHDKVRHHVYSFSPAKTFELKLYSGVPTSPIV 76
           +Q E+EQK+  F PLV+VVQ GTPILFPNHD VRHHVYSFSPAKTFELKLYSGVP SP+V
Sbjct: 58  RQVEIEQKNKTFMPLVTVVQTGTPILFPNHDNVRHHVYSFSPAKTFELKLYSGVPGSPVV 117

Query: 77  FDKVGTVVLGCNIHDQMVAYVQVVNTPFFGKTDMAGRVKLDGLVNGKYALKAWYFKMAPN 136
           FDK GTVVLGCNIHD+MVAYVQVVNTPFFG TD +G VKL+G+ NGKY LKAWYF M PN
Sbjct: 118 FDKAGTVVLGCNIHDEMVAYVQVVNTPFFGVTDRSGSVKLEGVGNGKYTLKAWYFTMGPN 177

Query: 137 EAAMEQPITYQGADMNASVKLAVKAVPV 164
           EAA+EQP+  QG D  AS+KL VKAVP+
Sbjct: 178 EAAVEQPLQVQG-DGRASIKLNVKAVPL 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 481,028
Number of extensions: 19047
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)