BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0064.p (146 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspiri... 163 4e-42 gi|300312564|ref|YP_003776656.1| outer membrane multidrug resist... 113 8e-27 gi|300311423|ref|YP_003775515.1| NodT family protein [Herbaspiri... 86 8e-19 >gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspirillum seropedicae SmR1] Length = 495 Score = 163 bits (413), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 84/130 (64%), Positives = 101/130 (77%) Query: 2 LASSIASTYNQLATEYALHDIAQRTVNQRESLQRITSDRVKTGLDTQIERSQSQGSSAEA 61 L +SI + Y+QLA +YALHDI Q TV+QR SL++IT++R++TGLD+QIER QS+ SSA+A Sbjct: 188 LTASIVTVYSQLAAQYALHDILQSTVDQRTSLEKITAERLRTGLDSQIERDQSRTSSADA 247 Query: 62 RAQLVQSEGQITLTRQQLGVLIGKGPDRGLQLARPVIDMSKPFNLPQELPANLLGRRPDI 121 RAQL QSEGQI L RQQLG L GKGPD GLQLA P + LP ELP NL+GRRPDI Sbjct: 248 RAQLAQSEGQIVLLRQQLGALAGKGPDYGLQLAPPALQGLATPGLPAELPLNLMGRRPDI 307 Query: 122 VAARLRASAA 131 VAAR + AA Sbjct: 308 VAARWQVEAA 317 >gi|300312564|ref|YP_003776656.1| outer membrane multidrug resistance lipoprotein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 113 bits (282), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 64/131 (48%), Positives = 81/131 (61%) Query: 1 VLASSIASTYNQLATEYALHDIAQRTVNQRESLQRITSDRVKTGLDTQIERSQSQGSSAE 60 LA+SIAS Y +LA YA D + + R + + R GL+T+ Q + A Sbjct: 197 TLATSIASAYAELAQLYAQRDTNEAALKVRVESLDLFNQRFTNGLETRGSVKQMEARRAI 256 Query: 61 ARAQLVQSEGQITLTRQQLGVLIGKGPDRGLQLARPVIDMSKPFNLPQELPANLLGRRPD 120 A+A L ++ I L R +L L+G GPDRGLQL RP ID+S+PF LP +LP LLGRRPD Sbjct: 257 AQADLKATDESIGLQRNKLAALLGAGPDRGLQLTRPQIDLSRPFALPAQLPVELLGRRPD 316 Query: 121 IVAARLRASAA 131 IVAARLRA AA Sbjct: 317 IVAARLRAEAA 327 >gi|300311423|ref|YP_003775515.1| NodT family protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 86.3 bits (212), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 69/130 (53%) Query: 2 LASSIASTYNQLATEYALHDIAQRTVNQRESLQRITSDRVKTGLDTQIERSQSQGSSAEA 61 L ++ TY QLA +Y L D + + + + + + R K GL TQ+E +Q++ E Sbjct: 180 LEGNVVRTYVQLALQYGLLDNTEALLKEEQKILDLAHRRFKGGLGTQLEITQAESPLPET 239 Query: 62 RAQLVQSEGQITLTRQQLGVLIGKGPDRGLQLARPVIDMSKPFNLPQELPANLLGRRPDI 121 R Q+ I L R QL L+G GP + RP + + LP LPA+L+GRRPDI Sbjct: 240 RRQIEALHENIALIRNQLAALLGAGPGAADGVTRPGMQLQTSLGLPSALPADLVGRRPDI 299 Query: 122 VAARLRASAA 131 AAR R AA Sbjct: 300 SAARWRVEAA 309 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 423,467 Number of extensions: 16419 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 3 Length of query: 146 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 69 Effective length of database: 1,255,275 Effective search space: 86613975 Effective search space used: 86613975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)