BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0229.0063.p (103 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspiri... 164 2e-42 gi|300312564|ref|YP_003776656.1| outer membrane multidrug resist... 96 5e-22 gi|300311423|ref|YP_003775515.1| NodT family protein [Herbaspiri... 86 7e-19 gi|300313892|ref|YP_003777984.1| outer membrane drug efflux lipo... 73 5e-15 gi|300310691|ref|YP_003774783.1| outer membrane drug efflux lipo... 67 2e-13 >gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspirillum seropedicae SmR1] Length = 495 Score = 164 bits (414), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 76/91 (83%), Positives = 86/91 (94%) Query: 1 MATLTTPELPAQLPLNLLGRRPDIVAARWQVEAATKDIDVAKARFYPDINLSAMIGFDSL 60 + L TP LPA+LPLNL+GRRPDIVAARWQVEAA++ +DVAKARFYPDINLSAMIGFD+L Sbjct: 284 LQGLATPGLPAELPLNLMGRRPDIVAARWQVEAASRGVDVAKARFYPDINLSAMIGFDTL 343 Query: 61 LNSNPFTAASKSIAFGPAISLPVFEGGALRA 91 L+SNPFTAASKSIAFGPAI+LP+FEGGALRA Sbjct: 344 LDSNPFTAASKSIAFGPAITLPIFEGGALRA 374 >gi|300312564|ref|YP_003776656.1| outer membrane multidrug resistance lipoprotein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 95.9 bits (237), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 50/84 (59%), Positives = 59/84 (70%) Query: 9 LPAQLPLNLLGRRPDIVAARWQVEAATKDIDVAKARFYPDINLSAMIGFDSLLNSNPFTA 68 LPAQLP+ LLGRRPDIVAAR + EAA K I VA+A FYP++NL+A GF SL A Sbjct: 302 LPAQLPVELLGRRPDIVAARLRAEAAGKQIKVARAAFYPNVNLTAYFGFQSLGIDMLTRA 361 Query: 69 ASKSIAFGPAISLPVFEGGALRAR 92 S + GPAISLP+F GG LR + Sbjct: 362 GSDIGSIGPAISLPIFNGGRLRGQ 385 >gi|300311423|ref|YP_003775515.1| NodT family protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 85.5 bits (210), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 2/94 (2%) Query: 1 MATLTTPELPAQLPLNLLGRRPDIVAARWQVEAATKDIDVAKARFYPDINLSAMIGFDSL 60 M T+ LP+ LP +L+GRRPDI AARW+VEAA K I VAKA FYP+INL A IG + Sbjct: 276 MQLQTSLGLPSALPADLVGRRPDISAARWRVEAAAKGISVAKAAFYPNINLLAGIGPAAA 335 Query: 61 LNS--NPFTAASKSIAFGPAISLPVFEGGALRAR 92 + +A + +GPAISLP+FEGG LR + Sbjct: 336 GGGLFSFLSAPNLQTTYGPAISLPIFEGGRLRGQ 369 >gi|300313892|ref|YP_003777984.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 497 Score = 72.8 bits (177), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%) Query: 7 PELPAQLPLNLLGRRPDIVAARWQVEAATKDIDVAKARFYPDINLSAMIGFDSLLNSNPF 66 P PA LP +L RRPD++AA +++A DI A+A F+P I+L+A G S F Sbjct: 292 PATPAGLPSQVLLRRPDVLAAEHTLKSANADIGAARAAFFPSISLTANGGTASRTLGGLF 351 Query: 67 TAASKSIAFGPAISLPVFEGGALRARXDS 95 A S S F P+I+LP+F G+LRA DS Sbjct: 352 KAGSGSWTFSPSINLPIFNAGSLRASLDS 380 >gi|300310691|ref|YP_003774783.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 498 Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 53/95 (55%) Query: 9 LPAQLPLNLLGRRPDIVAARWQVEAATKDIDVAKARFYPDINLSAMIGFDSLLNSNPFTA 68 +P LP +LL RR DIV A + AA +I A+A FYP I L+ G S + F Sbjct: 291 IPPGLPSDLLQRRADIVQAERDLRAANANIGAARAAFYPSITLTVNAGTASARLAGLFKG 350 Query: 69 ASKSIAFGPAISLPVFEGGALRARXDSLTPRNNIS 103 S S +F P ISLP+F+GGA +A D T +IS Sbjct: 351 GSGSWSFVPQISLPIFDGGANQANLDIATVSRDIS 385 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 328,272 Number of extensions: 10828 Number of successful extensions: 47 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 14 Length of query: 103 Length of database: 1,619,870 Length adjustment: 71 Effective length of query: 32 Effective length of database: 1,283,685 Effective search space: 41077920 Effective search space used: 41077920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)