BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0061.p
         (104 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspiri...   117   2e-28
gi|300313892|ref|YP_003777984.1| outer membrane drug efflux lipo...    55   8e-10

>gi|300312015|ref|YP_003776107.1| NodT family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 495

 Score =  117 bits (292), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 75/90 (83%)

Query: 2   VARQITGIRSIDRQLPIRREALASTQRAYDLARERYRIGLTSQLVVLNAETALLAQQQAL 61
           VARQI  I + +RQLPIR EAL + +RAY LARERYR+GL SQL +L+A+T +LAQ+QA+
Sbjct: 401 VARQIAAIHATERQLPIRSEALQAAERAYALARERYRLGLVSQLTLLSAQTGVLAQRQAM 460

Query: 62  INLEASKRNQQIGLFKALGGGFDAQQAGLA 91
           + L+A +R+QQ+ L+KALGGGFDAQ+ GLA
Sbjct: 461 VALQAQRRDQQVALYKALGGGFDAQRDGLA 490


>gi|300313892|ref|YP_003777984.1| outer membrane drug efflux
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 497

 Score = 55.5 bits (132), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 51/76 (67%)

Query: 11  SIDRQLPIRREALASTQRAYDLARERYRIGLTSQLVVLNAETALLAQQQALINLEASKRN 70
           ++D++L  + +A A++++A+ L+  RYR G+ S L  L A+  L + QQ LI+L  ++++
Sbjct: 412 TLDQRLDAQGKATAASEKAFRLSDARYRNGVDSYLTTLVAQRTLYSAQQTLISLRLTEQS 471

Query: 71  QQIGLFKALGGGFDAQ 86
            +I L+K LGGG+  Q
Sbjct: 472 NRITLYKVLGGGWSEQ 487


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 169,222
Number of extensions: 3585
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 33
Effective length of database: 1,283,685
Effective search space: 42361605
Effective search space used: 42361605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)