BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0060.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312016|ref|YP_003776108.1| multidrug resistance A (translo...   513   e-146
gi|300312565|ref|YP_003776657.1| multidrug resistance transmembr...   244   5e-66
gi|300312487|ref|YP_003776579.1| multidrug resistance transport ...   114   1e-26

>gi|300312016|ref|YP_003776108.1| multidrug resistance A
           (translocase) transmembrane secretion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  513 bits (1320), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/313 (88%), Positives = 299/313 (95%)

Query: 8   KKXDTQVVKAGQQLVSLDAADTKLALAQAEAALAQAVRQTRQTFLNNDTLAANVAAAETN 67
           K  DTQVVKAGQQLV+LDAADT+LAL QA+AALAQAVRQTRQ FLNNDTLAANVAAA++N
Sbjct: 76  KADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNNDTLAANVAAADSN 135

Query: 68  LARSRDDLQRRQAGIASGAVSQEDLAHAQDAVKNAAAALDQARASLAANRALTDHTSVTE 127
           LAR+R+DLQRRQAG++SGAVSQED++HA+DAVK+A AALDQARA+ AANRALTDHTSVTE
Sbjct: 136 LARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALTDHTSVTE 195

Query: 128 HPNVLQAATQVRNAYLNYARVNIVAPVSGFVSKRSVQLGQRIAPGNPLMAIVPLEQIWID 187
           HPNVLQAAT VRNAYLNYARVNIVAPVSGFVSKRSVQ+GQRIA GNPLMAIVPLEQIWID
Sbjct: 196 HPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQIWID 255

Query: 188 ANFKEGQLKHIRIGQPVEVIADVYGSDVKYKGTVVGFSAGTGGAFSLLPAQNATGNWIKV 247
           ANFKE QL+HIRIGQPVEVIADVYGS VKYKGTV+GFSAGTGGAFSLLPAQNATGNWIKV
Sbjct: 256 ANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNWIKV 315

Query: 248 VQRVPVRIALDPQEVQAHPLRVGLSTTATVDIHGDGKTLEAAPTNFQTNVYSDLGKQADE 307
           VQRVPVRIALDP++V+AHPLR+GLSTTATVDIHGDG+ LEA PTN+QTNVY DLGKQAD 
Sbjct: 316 VQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDGRALEAVPTNYQTNVYDDLGKQADA 375

Query: 308 IVDRIISDNASGL 320
           IVDRIISDNASGL
Sbjct: 376 IVDRIISDNASGL 388


>gi|300312565|ref|YP_003776657.1| multidrug resistance transmembrane
           efflux pump protein [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  244 bits (624), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 137/299 (45%), Positives = 190/299 (63%), Gaps = 28/299 (9%)

Query: 11  DTQVVKAGQQLVSLDAADTKLALAQAEAALAQAVRQTRQTFLNNDTLAANVAA------- 63
           DTQ VK G  LV +D AD +LA+ QA A L +  R+ +  F N+  LAA V A       
Sbjct: 91  DTQAVKKGDVLVRIDDADARLAVDQAAADLDRTERKVKGFFANDAGLAAQVLAREAEQKR 150

Query: 64  -------AETNLARSRDDLQRRQAGIASGAVSQEDLAHAQDAV-------KNAAAALDQA 109
                  A+ +L R+  DLQRR+A   SG+VS E+L++A+ A+       K A AA  Q+
Sbjct: 151 ASAQLLSAQADLKRAEIDLQRREALAKSGSVSGEELSNARTALLTAQANLKAAEAAEVQS 210

Query: 110 RASLAANRA-------LTDHTSVTEHPNVLQAATQVRNAYLNYARVNIVAPVSGFVSKRS 162
           RA++ A +        LT +T+V ++P V+ A  ++  A L+  R  + APV G +++R 
Sbjct: 211 RANIKATQGAQKASTVLTANTTVDDNPEVVLARAKLEQAKLDLERTVLRAPVDGVIARRQ 270

Query: 163 VQLGQRIAPGNPLMAIVPLEQIWIDANFKEGQLKHIRIGQPVEVIADVYGSDVKYKGTVV 222
           VQ+GQR+  G  L+++VPL+Q+ +DANFKEGQL  +RIGQPV + AD+YG  V+Y G V 
Sbjct: 271 VQVGQRVQSGATLLSVVPLQQMHVDANFKEGQLTKVRIGQPVTMKADLYGGSVEYHGVVT 330

Query: 223 GFSAGTGGAFSLLPAQNATGNWIKVVQRVPVRIALDPQEVQAHPLRVGLSTTATVDIHG 281
           G S GTG AF+++PAQNATGNWIKVVQR+PVRI+LDP+E+   PL VGLS    +D  G
Sbjct: 331 GLSGGTGSAFAVIPAQNATGNWIKVVQRLPVRISLDPKELAQRPLSVGLSMVVEIDTRG 389


>gi|300312487|ref|YP_003776579.1| multidrug resistance transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 397

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 88/147 (59%), Gaps = 6/147 (4%)

Query: 134 AATQVRNAYLNYARVNIVAPVSGFVSKRSVQLGQRIAPGNPLMAIVPLEQIWIDANFKEG 193
           A  Q   A +N     I A V G +  + V++GQ ++PG  +M +VP  + ++ ANFKE 
Sbjct: 229 AKAQYDAASVNLGYTEIRASVDGRIGDKQVRVGQFVSPGTRMMTVVPT-RFYVSANFKET 287

Query: 194 QLKHIRIGQPVEVIADVYGSDVKYKGTVVGFSAGTGGAFSLLPAQNATGNWIKVVQRVPV 253
           Q+  +RIGQP  +  D     V++ G V   S GTG  FSLLP QNATGN+ K+VQRVPV
Sbjct: 288 QIGIMRIGQPAIIKVDALPG-VEFHGHVESLSPGTGAQFSLLPPQNATGNFTKIVQRVPV 346

Query: 254 RIALD--PQEVQAHPLRVGLSTTATVD 278
           R+A+D  P+E +A     GLS T  V+
Sbjct: 347 RVAIDATPEETRA--FVAGLSVTVEVN 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.126    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 860,758
Number of extensions: 33895
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 131 (55.1 bits)