BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0059.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312017|ref|YP_003776109.1| multidrug resistance B (translo...   209   2e-55
gi|300312566|ref|YP_003776658.1| multidrug resistance protein pr...   101   8e-23
gi|300312486|ref|YP_003776578.1| major facilitator superfamily p...    67   2e-12
gi|300312683|ref|YP_003776775.1| major facilitator superfamily p...    65   6e-12
gi|300310323|ref|YP_003774415.1| methylenomycin A resistance pro...    59   3e-10

>gi|300312017|ref|YP_003776109.1| multidrug resistance B
           (translocase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 524

 Score =  209 bits (531), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/119 (89%), Positives = 111/119 (93%), Gaps = 3/119 (2%)

Query: 1   MASSP---QTYTPPPPLTGGKLVLGTLCVSLAVFMNVLDSSIANVAIPTISGNLGVSIDE 57
           MA+SP   Q YTPPPPLTG  LVLGTL VSLAVFMNVLDSSIANVAIPTISGNLGVS+DE
Sbjct: 1   MATSPTPSQAYTPPPPLTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDE 60

Query: 58  GTWVITSFAAANAISIPLTGWLTQRIGAVRLFVSSVLLFVLASWLCGLAPTLPILLGAR 116
           GTWVITSFAAANAISIPLTGWLTQR+GAVRLFV+SVLLFVLASWLCGLAPTLPILL AR
Sbjct: 61  GTWVITSFAAANAISIPLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAAR 119


>gi|300312566|ref|YP_003776658.1| multidrug resistance protein
           protein [Herbaspirillum seropedicae SmR1]
          Length = 525

 Score =  101 bits (251), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 77/103 (74%)

Query: 14  LTGGKLVLGTLCVSLAVFMNVLDSSIANVAIPTISGNLGVSIDEGTWVITSFAAANAISI 73
           L+GG+LV   + ++ A F+ VLD++IANV++ TI+G LG S  +GT+VITS+A A AI++
Sbjct: 26  LSGGQLVGAGILLAAANFIAVLDTTIANVSVSTIAGALGASTSQGTYVITSYAVAEAITV 85

Query: 74  PLTGWLTQRIGAVRLFVSSVLLFVLASWLCGLAPTLPILLGAR 116
           PLTGWL  R G VR+F+ S+++F L S LCG+A +L +L+  R
Sbjct: 86  PLTGWLANRFGTVRVFILSMVMFGLFSALCGMANSLGMLIAFR 128


>gi|300312486|ref|YP_003776578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 514

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 56/90 (62%)

Query: 27  SLAVFMNVLDSSIANVAIPTISGNLGVSIDEGTWVITSFAAANAISIPLTGWLTQRIGAV 86
           +L   M  LD SI N ++PTI G +G S  EGTW+ T++  A  + IP++ WL + +G  
Sbjct: 23  TLGALMATLDISIVNSSLPTIQGEIGASGTEGTWIATAYLVAEIVIIPMSAWLERLLGLR 82

Query: 87  RLFVSSVLLFVLASWLCGLAPTLPILLGAR 116
            L +++  LF L S LCGL+ TLP+++  R
Sbjct: 83  VLLLTAASLFTLFSVLCGLSTTLPMMIVGR 112


>gi|300312683|ref|YP_003776775.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 54/92 (58%)

Query: 25  CVSLAVFMNVLDSSIANVAIPTISGNLGVSIDEGTWVITSFAAANAISIPLTGWLTQRIG 84
            V+   FM  LD++I N A+P ++ +LG  +     V+ ++    A   P +GWL  R G
Sbjct: 57  IVASGFFMQTLDTTIVNTALPAMARSLGEPVLNMHPVVVAYTLTMASLTPASGWLADRFG 116

Query: 85  AVRLFVSSVLLFVLASWLCGLAPTLPILLGAR 116
             R++ +++LLF L S LC +A +LP+LL AR
Sbjct: 117 TRRMYFAAILLFSLGSLLCAMASSLPMLLAAR 148


>gi|300310323|ref|YP_003774415.1| methylenomycin A resistance
           protein [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 53/93 (56%)

Query: 24  LCVSLAVFMNVLDSSIANVAIPTISGNLGVSIDEGTWVITSFAAANAISIPLTGWLTQRI 83
           + +++   M +LD ++ NV +  I+G+L   +    W++  +    A  + + G L  R 
Sbjct: 33  VALAIGFVMAMLDVTVVNVGLSNIAGSLDAPLSTLVWIVDGYTLTFAAMLLVGGALADRF 92

Query: 84  GAVRLFVSSVLLFVLASWLCGLAPTLPILLGAR 116
           GA RL+++ + LFVLAS LCG AP  P L+ AR
Sbjct: 93  GARRLYLTGLFLFVLASLLCGAAPNGPFLIVAR 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,981
Number of extensions: 23597
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 10
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)